Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Tdicoccoides_TRIDC4BG064040 [ TRIDC4BG064040] |
4B | 672291523 | 672295672 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Tdicoccoides_TRIDC4BG064040.1 TRIDC4BG064040.1 |
Low | No | 2840 | OG0006652 | Get ORF Coding potential... Type: noncoding Potential: -0.881 Folding energies... MFEI: -30.514 AMFE: -0.656 GC content %: 46.514 | |
Tdicoccoides_TRIDC4BG064040.2 TRIDC4BG064040.2 |
Low | No | 3189 | OG0006652 | Get ORF Coding potential... Type: noncoding Potential: -1.200 Folding energies... MFEI: -30.107 AMFE: -0.670 GC content %: 44.936 | |
Tdicoccoides_TRIDC4BG064040.3 TRIDC4BG064040.3 |
Low | No | 3147 | OG0006652 | Get ORF Coding potential... Type: noncoding Potential: -1.200 Folding energies... MFEI: -29.819 AMFE: -0.664 GC content %: 44.900 | |
Tdicoccoides_TRIDC4BG064040.4 TRIDC4BG064040.4 |
Low | No | 2221 | OG0006652 | Get ORF Coding potential... Type: noncoding Potential: -0.998 Folding energies... MFEI: -26.020 AMFE: -0.636 GC content %: 40.882 | |
Tdicoccoides_TRIDC4BG064040.5 TRIDC4BG064040.5 |
Low | No | 1574 | OG0006652 | Get ORF Coding potential... Type: noncoding Potential: -1.174 Folding energies... MFEI: -26.112 AMFE: -0.642 GC content %: 40.661 | |
Tdicoccoides_TRIDC4BG064040.6 TRIDC4BG064040.6 |
High | No | 1365 | OG0006652 | Get ORF Coding potential... Type: noncoding Potential: -1.163 Folding energies... MFEI: -24.659 AMFE: -0.646 GC content %: 38.168 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Tdicoccoides_TRIDC4BG064040.2 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
Tdicoccoides_TRIDC4BG064040.2 | SwissProt | 2021-04-01 | Q655V4 | 3.22e-6 |
Tdicoccoides_TRIDC4BG064040.3 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
Tdicoccoides_TRIDC4BG064040.3 | SwissProt | 2021-04-01 | Q655V4 | 3.17e-6 |
Tdicoccoides_TRIDC4BG064040.4 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
Tdicoccoides_TRIDC4BG064040.4 | SwissProt | 2021-04-01 | Q655V4 | 6.97e-5 |
Tdicoccoides_TRIDC4BG064040.5 | SwissProt | 2021-04-01 | Q655V4 | 4.52e-5 |
Tdicoccoides_TRIDC4BG064040.1 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
Tdicoccoides_TRIDC4BG064040.1 | SwissProt | 2021-04-01 | Q655V4 | 8.83e-9 |