Tdicoccoides TRIDC5AG009150
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC5AG009150 [ TRIDC5AG009150] |
5A | 59746626 | 59756822 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC5AG009150.10 TRIDC5AG009150.10 |
Low | No | 1888 | OG0003589 | Get ORF Coding potential... Type: noncoding Potential: -1.059 Folding energies... MFEI: -29.364 AMFE: -0.661 GC content %: 44.439 | |
| Tdicoccoides_TRIDC5AG009150.11 TRIDC5AG009150.11 |
High | No | 2324 | OG0003589 | Get ORF Coding potential... Type: noncoding Potential: -1.075 Folding energies... MFEI: -28.382 AMFE: -0.670 GC content %: 42.341 | |
| Tdicoccoides_TRIDC5AG009150.15 TRIDC5AG009150.15 |
Low | No | 2037 | OG0003589 | Get ORF Coding potential... Type: noncoding Potential: -1.081 Folding energies... MFEI: -31.203 AMFE: -0.668 GC content %: 46.735 | |
| Tdicoccoides_TRIDC5AG009150.16 TRIDC5AG009150.16 |
Low | No | 1658 | OG0003589 | Get ORF Coding potential... Type: noncoding Potential: -1.247 Folding energies... MFEI: -29.210 AMFE: -0.696 GC content %: 41.978 | |
| Tdicoccoides_TRIDC5AG009150.7 TRIDC5AG009150.7 |
Low | No | 2435 | OG0003589 | Get ORF Coding potential... Type: noncoding Potential: -1.101 Folding energies... MFEI: -30.349 AMFE: -0.687 GC content %: 44.189 | |
| Tdicoccoides_TRIDC5AG009150.8 TRIDC5AG009150.8 |
High | No | 2532 | OG0003589 | Get ORF Coding potential... Type: noncoding Potential: -1.105 Folding energies... MFEI: -29.961 AMFE: -0.682 GC content %: 43.918 | |
| Tdicoccoides_TRIDC5AG009150.9 TRIDC5AG009150.9 |
High | No | 2845 | OG0003589 | Get ORF Coding potential... Type: noncoding Potential: -1.115 Folding energies... MFEI: -29.072 AMFE: -0.685 GC content %: 42.425 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC5AG009150.15 | SwissProt | 2021-04-01 | Q5PNZ1 | 1.08e-5 |
| Tdicoccoides_TRIDC5AG009150.16 | SwissProt | 2021-04-01 | Q5PNZ1 | 5.37e-6 |
| Tdicoccoides_TRIDC5AG009150.7 | SwissProt | 2021-04-01 | Q5PNZ1 | 1.37e-5 |
| Tdicoccoides_TRIDC5AG009150.10 | SwissProt | 2021-04-01 | Q5PNZ1 | 9.71e-6 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
