Tdicoccoides TRIDC5AG015670
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC5AG015670 [ TRIDC5AG015670] |
5A | 149463655 | 149467511 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC5AG015670.1 TRIDC5AG015670.1 |
High | No | 1070 | OG0000744 | Get ORF Coding potential... Type: noncoding Potential: -1.042 Folding energies... MFEI: -31.542 AMFE: -0.616 GC content %: 51.215 | |
| Tdicoccoides_TRIDC5AG015670.11 TRIDC5AG015670.11 |
High | No | 1687 | OG0000744 | Get ORF Coding potential... Type: noncoding Potential: -1.236 Folding energies... MFEI: -29.229 AMFE: -0.650 GC content %: 44.991 | |
| Tdicoccoides_TRIDC5AG015670.3 TRIDC5AG015670.3 |
High | No | 1854 | OG0000744 | Get ORF Coding potential... Type: noncoding Potential: -1.250 Folding energies... MFEI: -28.285 AMFE: -0.634 GC content %: 44.606 | |
| Tdicoccoides_TRIDC5AG015670.4 TRIDC5AG015670.4 |
High | No | 1092 | OG0000744 | Get ORF Coding potential... Type: noncoding Potential: -1.047 Folding energies... MFEI: -31.062 AMFE: -0.606 GC content %: 51.282 | |
| Tdicoccoides_TRIDC5AG015670.6 TRIDC5AG015670.6 |
High | No | 1822 | OG0000744 | Get ORF Coding potential... Type: noncoding Potential: -1.248 Folding energies... MFEI: -28.419 AMFE: -0.639 GC content %: 44.457 | |
| Tdicoccoides_TRIDC5AG015670.9 TRIDC5AG015670.9 |
High | No | 1201 | OG0000744 | Get ORF Coding potential... Type: noncoding Potential: -1.283 Folding energies... MFEI: -30.408 AMFE: -0.616 GC content %: 49.376 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
