Tdicoccoides TRIDC5AG016500
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC5AG016500 [ TRIDC5AG016500] |
5A | 168316126 | 168319731 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC5AG016500.1 TRIDC5AG016500.1 |
High | No | 1673 | OG0000841 | Get ORF Coding potential... Type: noncoding Potential: -1.315 Folding energies... MFEI: -24.328 AMFE: -0.656 GC content %: 37.059 | |
| Tdicoccoides_TRIDC5AG016500.10 TRIDC5AG016500.10 |
Low | No | 1594 | OG0000841 | Get ORF Coding potential... Type: noncoding Potential: -1.046 Folding energies... MFEI: -28.733 AMFE: -0.633 GC content %: 45.420 | |
| Tdicoccoides_TRIDC5AG016500.11 TRIDC5AG016500.11 |
Low | No | 1609 | OG0000841 | Get ORF Coding potential... Type: noncoding Potential: -1.062 Folding energies... MFEI: -24.319 AMFE: -0.633 GC content %: 38.409 | |
| Tdicoccoides_TRIDC5AG016500.12 TRIDC5AG016500.12 |
Low | No | 615 | OG0000841 | Get ORF Coding potential... Type: noncoding Potential: -0.851 Folding energies... MFEI: -30.016 AMFE: -0.581 GC content %: 51.707 | |
| Tdicoccoides_TRIDC5AG016500.2 TRIDC5AG016500.2 |
High | No | 1574 | OG0000841 | Get ORF Coding potential... Type: noncoding Potential: -1.310 Folding energies... MFEI: -24.225 AMFE: -0.662 GC content %: 36.595 | |
| Tdicoccoides_TRIDC5AG016500.3 TRIDC5AG016500.3 |
Low | No | 1646 | OG0000841 | Get ORF Coding potential... Type: noncoding Potential: -1.215 Folding energies... MFEI: -27.375 AMFE: -0.655 GC content %: 41.798 | |
| Tdicoccoides_TRIDC5AG016500.4 TRIDC5AG016500.4 |
High | No | 2245 | OG0000841 | Get ORF Coding potential... Type: noncoding Potential: -1.034 Folding energies... MFEI: -27.203 AMFE: -0.662 GC content %: 41.114 | |
| Tdicoccoides_TRIDC5AG016500.5 TRIDC5AG016500.5 |
High | No | 2110 | OG0000841 | Get ORF Coding potential... Type: noncoding Potential: -1.330 Folding energies... MFEI: -23.341 AMFE: -0.661 GC content %: 35.308 | |
| Tdicoccoides_TRIDC5AG016500.7 TRIDC5AG016500.7 |
High | No | 1316 | OG0000841 | Get ORF Coding potential... Type: noncoding Potential: -1.258 Folding energies... MFEI: -26.178 AMFE: -0.633 GC content %: 41.337 | |
| Tdicoccoides_TRIDC5AG016500.8 TRIDC5AG016500.8 |
Low | No | 1145 | OG0000841 | Get ORF Coding potential... Type: noncoding Potential: -0.928 Folding energies... MFEI: -29.755 AMFE: -0.655 GC content %: 45.415 | |
| Tdicoccoides_TRIDC5AG016500.9 TRIDC5AG016500.9 |
Low | No | 1740 | OG0000841 | Get ORF Coding potential... Type: noncoding Potential: -1.054 Folding energies... MFEI: -27.839 AMFE: -0.627 GC content %: 44.368 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC5AG016500.10 | SwissProt | 2021-04-01 | P38838 | 4.74e-5 |
| Tdicoccoides_TRIDC5AG016500.11 | SwissProt | 2021-04-01 | P38838 | 2.1e-4 |
| Tdicoccoides_TRIDC5AG016500.12 | SwissProt | 2021-04-01 | P38838 | 4.37e-5 |
| Tdicoccoides_TRIDC5AG016500.3 | SwissProt | 2021-04-01 | P38838 | 1.0e-3 |
| Tdicoccoides_TRIDC5AG016500.8 | SwissProt | 2021-04-01 | P38838 | 1.65e-4 |
| Tdicoccoides_TRIDC5AG016500.9 | SwissProt | 2021-04-01 | P38838 | 5.27e-5 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
