GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Tdicoccoides_TRIDC5AG017110 [ TRIDC5AG017110]	5A	193395275	193398964	v1	Triticum dicoccoides (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Tdicoccoides_TRIDC5AG017110.1 TRIDC5AG017110.1	High	No	551	OG0361943		Get ORF Coding potential... Type: noncoding Potential: -1.093 Folding energies... MFEI: -25.445 AMFE: -0.592 GC content %: 43.013
Tdicoccoides_TRIDC5AG017110.7 TRIDC5AG017110.7	High	No	237	OG0361944		Get ORF Coding potential... Type: noncoding Potential: -0.478 Folding energies... MFEI: -43.418 AMFE: -0.639 GC content %: 67.932
Tdicoccoides_TRIDC5AG017110.8 TRIDC5AG017110.8	High	No	220	OG0361945		Get ORF Coding potential... Type: noncoding Potential: -0.725 Folding energies... MFEI: -20.182 AMFE: -0.315 GC content %: 64.091

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).