GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Tdicoccoides_TRIDC5AG023340 [ TRIDC5AG023340]	5A	307177914	307198749	v1	Triticum dicoccoides (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Tdicoccoides_TRIDC5AG023340.18 TRIDC5AG023340.18	High	No	289	OG0362028		Get ORF Coding potential... Type: noncoding Potential: -0.636 Folding energies... MFEI: -27.301 AMFE: -0.631 GC content %: 43.253
Tdicoccoides_TRIDC5AG023340.19 TRIDC5AG023340.19	High	No	456	OG0023173		Get ORF Coding potential... Type: noncoding Potential: -0.791 Folding energies... MFEI: -26.930 AMFE: -0.650 GC content %: 41.447
Tdicoccoides_TRIDC5AG023340.20 TRIDC5AG023340.20	High	No	352	OG0023173		Get ORF Coding potential... Type: noncoding Potential: -0.820 Folding energies... MFEI: -28.097 AMFE: -0.599 GC content %: 46.875

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).