Tdicoccoides TRIDC5AG025650
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC5AG025650 [ TRIDC5AG025650] |
5A | 328817940 | 328824873 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC5AG025650.1 TRIDC5AG025650.1 |
Low | No | 4561 | OG0001842 | Get ORF Coding potential... Type: coding Potential: 3.947 Folding energies... MFEI: -30.807 AMFE: -0.664 GC content %: 46.393 | |
| Tdicoccoides_TRIDC5AG025650.10 TRIDC5AG025650.10 |
Low | No | 3779 | OG0001842 | Get ORF Coding potential... Type: coding Potential: 3.741 Folding energies... MFEI: -31.821 AMFE: -0.663 GC content %: 47.976 | |
| Tdicoccoides_TRIDC5AG025650.11 TRIDC5AG025650.11 |
High | No | 1117 | OG0001842 | Get ORF Coding potential... Type: noncoding Potential: -0.408 Folding energies... MFEI: -31.432 AMFE: -0.660 GC content %: 47.628 | |
| Tdicoccoides_TRIDC5AG025650.2 TRIDC5AG025650.2 |
Low | No | 4416 | OG0001842 | Get ORF Coding potential... Type: coding Potential: 5.143 Folding energies... MFEI: -31.073 AMFE: -0.665 GC content %: 46.694 | |
| Tdicoccoides_TRIDC5AG025650.3 TRIDC5AG025650.3 |
Low | No | 3918 | OG0001842 | Get ORF Coding potential... Type: coding Potential: 3.854 Folding energies... MFEI: -31.603 AMFE: -0.665 GC content %: 47.499 | |
| Tdicoccoides_TRIDC5AG025650.4 TRIDC5AG025650.4 |
Low | No | 3758 | OG0001842 | Get ORF Coding potential... Type: coding Potential: 3.871 Folding energies... MFEI: -31.543 AMFE: -0.662 GC content %: 47.632 | |
| Tdicoccoides_TRIDC5AG025650.5 TRIDC5AG025650.5 |
Low | No | 3565 | OG0001842 | Get ORF Coding potential... Type: coding Potential: 5.169 Folding energies... MFEI: -32.157 AMFE: -0.653 GC content %: 49.229 | |
| Tdicoccoides_TRIDC5AG025650.6 TRIDC5AG025650.6 |
Low | No | 3804 | OG0001842 | Get ORF Coding potential... Type: coding Potential: 3.565 Folding energies... MFEI: -31.756 AMFE: -0.661 GC content %: 48.028 | |
| Tdicoccoides_TRIDC5AG025650.7 TRIDC5AG025650.7 |
Low | No | 3698 | OG0001842 | Get ORF Coding potential... Type: coding Potential: 3.452 Folding energies... MFEI: -31.704 AMFE: -0.661 GC content %: 47.945 | |
| Tdicoccoides_TRIDC5AG025650.8 TRIDC5AG025650.8 |
Low | No | 3883 | OG0001842 | Get ORF Coding potential... Type: coding Potential: 3.770 Folding energies... MFEI: -31.414 AMFE: -0.663 GC content %: 47.386 | |
| Tdicoccoides_TRIDC5AG025650.9 TRIDC5AG025650.9 |
Low | No | 3690 | OG0001842 | Get ORF Coding potential... Type: coding Potential: 3.874 Folding energies... MFEI: -31.873 AMFE: -0.661 GC content %: 48.184 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
