Tdicoccoides TRIDC5AG026800
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC5AG026800 [ TRIDC5AG026800] |
5A | 342859177 | 342863312 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC5AG026800.1 TRIDC5AG026800.1 |
Low | No | 3355 | OG0001259 | Get ORF Coding potential... Type: noncoding Potential: -1.230 Folding energies... MFEI: -26.024 AMFE: -0.624 GC content %: 41.699 | |
| Tdicoccoides_TRIDC5AG026800.10 TRIDC5AG026800.10 |
High | No | 1943 | OG0001259 | Get ORF Coding potential... Type: noncoding Potential: -1.195 Folding energies... MFEI: -23.793 AMFE: -0.600 GC content %: 39.681 | |
| Tdicoccoides_TRIDC5AG026800.11 TRIDC5AG026800.11 |
Low | No | 2720 | OG0001259 | Get ORF Coding potential... Type: noncoding Potential: -1.328 Folding energies... MFEI: -22.430 AMFE: -0.623 GC content %: 36.029 | |
| Tdicoccoides_TRIDC5AG026800.12 TRIDC5AG026800.12 |
Low | No | 1333 | OG0001259 | Get ORF Coding potential... Type: noncoding Potential: -1.273 Folding energies... MFEI: -22.161 AMFE: -0.580 GC content %: 38.185 | |
| Tdicoccoides_TRIDC5AG026800.13 TRIDC5AG026800.13 |
Low | No | 2226 | OG0001259 | Get ORF Coding potential... Type: noncoding Potential: -1.205 Folding energies... MFEI: -23.235 AMFE: -0.573 GC content %: 40.566 | |
| Tdicoccoides_TRIDC5AG026800.2 TRIDC5AG026800.2 |
Low | No | 4120 | OG0001259 | Get ORF Coding potential... Type: noncoding Potential: -1.239 Folding energies... MFEI: -24.951 AMFE: -0.620 GC content %: 40.267 | |
| Tdicoccoides_TRIDC5AG026800.3 TRIDC5AG026800.3 |
Low | No | 3935 | OG0001259 | Get ORF Coding potential... Type: noncoding Potential: -1.237 Folding energies... MFEI: -24.684 AMFE: -0.616 GC content %: 40.051 | |
| Tdicoccoides_TRIDC5AG026800.4 TRIDC5AG026800.4 |
Low | No | 3551 | OG0001259 | Get ORF Coding potential... Type: noncoding Potential: -1.232 Folding energies... MFEI: -25.300 AMFE: -0.617 GC content %: 40.974 | |
| Tdicoccoides_TRIDC5AG026800.5 TRIDC5AG026800.5 |
Low | No | 2832 | OG0001259 | Get ORF Coding potential... Type: noncoding Potential: -1.331 Folding energies... MFEI: -23.143 AMFE: -0.611 GC content %: 37.888 | |
| Tdicoccoides_TRIDC5AG026800.6 TRIDC5AG026800.6 |
Low | No | 3384 | OG0001259 | Get ORF Coding potential... Type: noncoding Potential: -1.339 Folding energies... MFEI: -23.165 AMFE: -0.621 GC content %: 37.323 | |
| Tdicoccoides_TRIDC5AG026800.7 TRIDC5AG026800.7 |
Low | No | 3003 | OG0001259 | Get ORF Coding potential... Type: noncoding Potential: -1.224 Folding energies... MFEI: -24.046 AMFE: -0.609 GC content %: 39.494 | |
| Tdicoccoides_TRIDC5AG026800.8 TRIDC5AG026800.8 |
High | No | 3548 | OG0001259 | Get ORF Coding potential... Type: noncoding Potential: -1.260 Folding energies... MFEI: -26.020 AMFE: -0.638 GC content %: 40.812 | |
| Tdicoccoides_TRIDC5AG026800.9 TRIDC5AG026800.9 |
High | No | 3076 | OG0001259 | Get ORF Coding potential... Type: noncoding Potential: -1.344 Folding energies... MFEI: -25.722 AMFE: -0.636 GC content %: 40.475 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC5AG026800.5 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy; RC/Helitron | |
| Tdicoccoides_TRIDC5AG026800.12 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy; RC/Helitron | |
| Tdicoccoides_TRIDC5AG026800.6 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy; RC/Helitron | |
| Tdicoccoides_TRIDC5AG026800.13 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy; RC/Helitron | |
| Tdicoccoides_TRIDC5AG026800.7 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy; RC/Helitron | |
| Tdicoccoides_TRIDC5AG026800.2 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy; RC/Helitron | |
| Tdicoccoides_TRIDC5AG026800.3 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy; RC/Helitron | |
| Tdicoccoides_TRIDC5AG026800.1 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy; RC/Helitron | |
| Tdicoccoides_TRIDC5AG026800.4 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy; RC/Helitron | |
| Tdicoccoides_TRIDC5AG026800.11 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy; RC/Helitron |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
