Tdicoccoides TRIDC5AG031670
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC5AG031670 [ TRIDC5AG031670] |
5A | 396681851 | 396684308 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC5AG031670.1 TRIDC5AG031670.1 |
High | No | 2161 | OG0009465 | Get ORF Coding potential... Type: noncoding Potential: -0.991 Folding energies... MFEI: -31.442 AMFE: -0.661 GC content %: 47.571 | |
| Tdicoccoides_TRIDC5AG031670.2 TRIDC5AG031670.2 |
High | No | 1308 | OG0009465 | Get ORF Coding potential... Type: noncoding Potential: -1.179 Folding energies... MFEI: -35.372 AMFE: -0.693 GC content %: 51.070 | |
| Tdicoccoides_TRIDC5AG031670.3 TRIDC5AG031670.3 |
High | No | 1714 | OG0009465 | Get ORF Coding potential... Type: noncoding Potential: -1.163 Folding energies... MFEI: -26.889 AMFE: -0.641 GC content %: 41.949 | |
| Tdicoccoides_TRIDC5AG031670.4 TRIDC5AG031670.4 |
High | No | 656 | OG0009465 | Get ORF Coding potential... Type: noncoding Potential: -1.097 Folding energies... MFEI: -24.405 AMFE: -0.570 GC content %: 42.835 | |
| Tdicoccoides_TRIDC5AG031670.5 TRIDC5AG031670.5 |
High | No | 639 | OG0009465 | Get ORF Coding potential... Type: noncoding Potential: -1.111 Folding energies... MFEI: -26.944 AMFE: -0.626 GC content %: 43.036 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
