Tdicoccoides TRIDC5AG033710
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC5AG033710 [ TRIDC5AG033710] |
5A | 420943262 | 420946469 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC5AG033710.1 TRIDC5AG033710.1 |
High | No | 523 | OG0006656 | Get ORF Coding potential... Type: noncoding Potential: -0.954 Folding energies... MFEI: -25.258 AMFE: -0.623 GC content %: 40.535 | |
| Tdicoccoides_TRIDC5AG033710.10 TRIDC5AG033710.10 |
High | No | 705 | OG0362180 | Get ORF Coding potential... Type: noncoding Potential: -0.792 Folding energies... MFEI: -30.284 AMFE: -0.630 GC content %: 48.085 | |
| Tdicoccoides_TRIDC5AG033710.11 TRIDC5AG033710.11 |
High | No | 664 | OG0006656 | Get ORF Coding potential... Type: noncoding Potential: -0.672 Folding energies... MFEI: -29.187 AMFE: -0.619 GC content %: 47.139 | |
| Tdicoccoides_TRIDC5AG033710.2 TRIDC5AG033710.2 |
High | No | 568 | OG0025603 | Get ORF Coding potential... Type: noncoding Potential: -0.896 Folding energies... MFEI: -28.275 AMFE: -0.642 GC content %: 44.014 | |
| Tdicoccoides_TRIDC5AG033710.3 TRIDC5AG033710.3 |
High | No | 782 | OG0006656 | Get ORF Coding potential... Type: noncoding Potential: -0.468 Folding energies... MFEI: -28.632 AMFE: -0.657 GC content %: 43.606 | |
| Tdicoccoides_TRIDC5AG033710.4 TRIDC5AG033710.4 |
High | No | 993 | OG0362181 | Get ORF Coding potential... Type: noncoding Potential: -0.681 Folding energies... MFEI: -30.081 AMFE: -0.608 GC content %: 49.446 | |
| Tdicoccoides_TRIDC5AG033710.5 TRIDC5AG033710.5 |
High | No | 1058 | OG0006656 | Get ORF Coding potential... Type: noncoding Potential: -0.731 Folding energies... MFEI: -28.941 AMFE: -0.651 GC content %: 44.423 | |
| Tdicoccoides_TRIDC5AG033710.6 TRIDC5AG033710.6 |
High | No | 890 | OG0006656 | Get ORF Coding potential... Type: noncoding Potential: -0.329 Folding energies... MFEI: -30.326 AMFE: -0.635 GC content %: 47.753 | |
| Tdicoccoides_TRIDC5AG033710.9 TRIDC5AG033710.9 |
High | No | 704 | OG0006656 | Get ORF Coding potential... Type: noncoding Potential: -1.114 Folding energies... MFEI: -27.259 AMFE: -0.644 GC content %: 42.330 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
