GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Tdicoccoides_TRIDC5AG034030 [ TRIDC5AG034030]	5A	423421752	423426242	v1	Triticum dicoccoides (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Tdicoccoides_TRIDC5AG034030.2 TRIDC5AG034030.2	Low	No	926	OG0023179		Get ORF Coding potential... Type: noncoding Potential: -0.901 Folding energies... MFEI: -30.119 AMFE: -0.650 GC content %: 46.328
Tdicoccoides_TRIDC5AG034030.5 TRIDC5AG034030.5	High	No	1000	OG0023179		Get ORF Coding potential... Type: noncoding Potential: -0.910 Folding energies... MFEI: -30.290 AMFE: -0.656 GC content %: 46.200
Tdicoccoides_TRIDC5AG034030.8 TRIDC5AG034030.8	High	No	1261	OG0023179		Get ORF Coding potential... Type: noncoding Potential: -0.963 Folding energies... MFEI: -28.287 AMFE: -0.652 GC content %: 43.378

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
Tdicoccoides_TRIDC5AG034030.2	SwissProt	2021-04-01	Q54YY1	4.49e-6

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).