Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Tdicoccoides_TRIDC5AG046270 [ TRIDC5AG046270] |
5A | 518949231 | 518954603 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Tdicoccoides_TRIDC5AG046270.1 TRIDC5AG046270.1 |
Low | No | 612 | OG0062285 | Get ORF Coding potential... Type: noncoding Potential: -0.344 Folding energies... MFEI: -35.458 AMFE: -0.693 GC content %: 51.144 | |
Tdicoccoides_TRIDC5AG046270.10 TRIDC5AG046270.10 |
Low | No | 1493 | OG0002793 | Get ORF Coding potential... Type: noncoding Potential: -1.096 Folding energies... MFEI: -28.339 AMFE: -0.655 GC content %: 43.269 | |
Tdicoccoides_TRIDC5AG046270.11 TRIDC5AG046270.11 |
Low | No | 1338 | OG0002793 | Get ORF Coding potential... Type: noncoding Potential: -1.086 Folding energies... MFEI: -28.087 AMFE: -0.664 GC content %: 42.302 | |
Tdicoccoides_TRIDC5AG046270.2 TRIDC5AG046270.2 |
High | No | 387 | OG0062285 | Get ORF Coding potential... Type: noncoding Potential: -0.693 Folding energies... MFEI: -28.501 AMFE: -0.660 GC content %: 43.152 | |
Tdicoccoides_TRIDC5AG046270.3 TRIDC5AG046270.3 |
High | No | 2074 | OG0002793 | Get ORF Coding potential... Type: noncoding Potential: -1.111 Folding energies... MFEI: -28.434 AMFE: -0.690 GC content %: 41.225 | |
Tdicoccoides_TRIDC5AG046270.4 TRIDC5AG046270.4 |
High | No | 2138 | OG0002793 | Get ORF Coding potential... Type: noncoding Potential: -1.113 Folding energies... MFEI: -28.850 AMFE: -0.681 GC content %: 42.376 | |
Tdicoccoides_TRIDC5AG046270.5 TRIDC5AG046270.5 |
Low | No | 1500 | OG0002793 | Get ORF Coding potential... Type: noncoding Potential: -1.097 Folding energies... MFEI: -28.073 AMFE: -0.651 GC content %: 43.133 | |
Tdicoccoides_TRIDC5AG046270.6 TRIDC5AG046270.6 |
High | No | 2201 | OG0002793 | Get ORF Coding potential... Type: noncoding Potential: -1.125 Folding energies... MFEI: -27.089 AMFE: -0.670 GC content %: 40.436 | |
Tdicoccoides_TRIDC5AG046270.7 TRIDC5AG046270.7 |
High | No | 2126 | OG0002793 | Get ORF Coding potential... Type: noncoding Potential: -1.123 Folding energies... MFEI: -27.278 AMFE: -0.670 GC content %: 40.734 | |
Tdicoccoides_TRIDC5AG046270.8 TRIDC5AG046270.8 |
High | No | 2287 | OG0002793 | Get ORF Coding potential... Type: noncoding Potential: -1.127 Folding energies... MFEI: -27.036 AMFE: -0.671 GC content %: 40.271 | |
Tdicoccoides_TRIDC5AG046270.9 TRIDC5AG046270.9 |
Low | No | 1493 | OG0002793 | Get ORF Coding potential... Type: noncoding Potential: -1.096 Folding energies... MFEI: -27.267 AMFE: -0.650 GC content %: 41.929 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Tdicoccoides_TRIDC5AG046270.1 | SwissProt | 2021-04-01 | B6SFA4 | 6.64e-9 |
Tdicoccoides_TRIDC5AG046270.10 | SwissProt | 2021-04-01 | Q9SJ20 | 1.0e-3 |
Tdicoccoides_TRIDC5AG046270.11 | SwissProt | 2021-04-01 | Q9SJ20 | 8.0e-4 |
Tdicoccoides_TRIDC5AG046270.5 | SwissProt | 2021-04-01 | Q9SJ20 | 1.0e-3 |
Tdicoccoides_TRIDC5AG046270.9 | SwissProt | 2021-04-01 | Q9SJ20 | 1.0e-3 |