GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Tdicoccoides_TRIDC5AG070480 [ TRIDC5AG070480]	5A	655896932	655898232	v1	Triticum dicoccoides (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Tdicoccoides_TRIDC5AG070480.1 TRIDC5AG070480.1	High	No	1095	OG0062344		Get ORF Coding potential... Type: noncoding Potential: -1.359 Folding energies... MFEI: -29.178 AMFE: -0.605 GC content %: 48.219
Tdicoccoides_TRIDC5AG070480.2 TRIDC5AG070480.2	Low	No	315	OG0062344		Get ORF Coding potential... Type: noncoding Potential: -1.258 Folding energies... MFEI: -30.921 AMFE: -0.550 GC content %: 56.190

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
Tdicoccoides_TRIDC5AG070480.2	SwissProt	2021-04-01	Q8W453	4.15e-4

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).