Tdicoccoides TRIDC5BG001180
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC5BG001180 [ TRIDC5BG001180] |
5B | 6112168 | 6175575 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC5BG001180.10 TRIDC5BG001180.10 |
High | No | 983 | OG0000476 | Get ORF Coding potential... Type: noncoding Potential: -1.220 Folding energies... MFEI: -26.114 AMFE: -0.587 GC content %: 44.456 | |
| Tdicoccoides_TRIDC5BG001180.11 TRIDC5BG001180.11 |
High | No | 745 | OG0000476 | Get ORF Coding potential... Type: noncoding Potential: -1.146 Folding energies... MFEI: -27.852 AMFE: -0.585 GC content %: 47.651 | |
| Tdicoccoides_TRIDC5BG001180.12 TRIDC5BG001180.12 |
High | No | 844 | OG0000476 | Get ORF Coding potential... Type: noncoding Potential: -1.217 Folding energies... MFEI: -27.915 AMFE: -0.603 GC content %: 46.327 | |
| Tdicoccoides_TRIDC5BG001180.13 TRIDC5BG001180.13 |
High | No | 941 | OG0000476 | Get ORF Coding potential... Type: noncoding Potential: -1.141 Folding energies... MFEI: -26.738 AMFE: -0.600 GC content %: 44.527 | |
| Tdicoccoides_TRIDC5BG001180.14 TRIDC5BG001180.14 |
High | No | 835 | OG0000476 | Get ORF Coding potential... Type: noncoding Potential: -1.178 Folding energies... MFEI: -27.473 AMFE: -0.594 GC content %: 46.228 | |
| Tdicoccoides_TRIDC5BG001180.15 TRIDC5BG001180.15 |
High | No | 814 | OG0000476 | Get ORF Coding potential... Type: noncoding Potential: -1.138 Folding energies... MFEI: -26.732 AMFE: -0.585 GC content %: 45.700 | |
| Tdicoccoides_TRIDC5BG001180.16 TRIDC5BG001180.16 |
High | No | 697 | OG0000476 | Get ORF Coding potential... Type: noncoding Potential: -1.165 Folding energies... MFEI: -27.963 AMFE: -0.584 GC content %: 47.920 | |
| Tdicoccoides_TRIDC5BG001180.17 TRIDC5BG001180.17 |
High | No | 915 | OG0000476 | Get ORF Coding potential... Type: noncoding Potential: -1.169 Folding energies... MFEI: -26.831 AMFE: -0.602 GC content %: 44.590 | |
| Tdicoccoides_TRIDC5BG001180.18 TRIDC5BG001180.18 |
High | No | 838 | OG0000476 | Get ORF Coding potential... Type: noncoding Potential: -1.179 Folding energies... MFEI: -27.733 AMFE: -0.601 GC content %: 46.181 | |
| Tdicoccoides_TRIDC5BG001180.19 TRIDC5BG001180.19 |
High | No | 896 | OG0000476 | Get ORF Coding potential... Type: noncoding Potential: -1.163 Folding energies... MFEI: -27.109 AMFE: -0.606 GC content %: 44.754 | |
| Tdicoccoides_TRIDC5BG001180.2 TRIDC5BG001180.2 |
Low | No | 2203 | OG0000476 | Get ORF Coding potential... Type: noncoding Potential: -1.162 Folding energies... MFEI: -28.261 AMFE: -0.675 GC content %: 41.852 | |
| Tdicoccoides_TRIDC5BG001180.20 TRIDC5BG001180.20 |
High | No | 926 | OG0000476 | Get ORF Coding potential... Type: noncoding Potential: -1.241 Folding energies... MFEI: -26.814 AMFE: -0.597 GC content %: 44.924 | |
| Tdicoccoides_TRIDC5BG001180.21 TRIDC5BG001180.21 |
High | No | 676 | OG0000476 | Get ORF Coding potential... Type: noncoding Potential: -1.128 Folding energies... MFEI: -27.973 AMFE: -0.604 GC content %: 46.302 | |
| Tdicoccoides_TRIDC5BG001180.22 TRIDC5BG001180.22 |
High | No | 1183 | OG0000476 | Get ORF Coding potential... Type: noncoding Potential: -1.197 Folding energies... MFEI: -26.593 AMFE: -0.612 GC content %: 43.449 | |
| Tdicoccoides_TRIDC5BG001180.3 TRIDC5BG001180.3 |
Low | No | 2273 | OG0000476 | Get ORF Coding potential... Type: noncoding Potential: -1.166 Folding energies... MFEI: -28.161 AMFE: -0.685 GC content %: 41.135 | |
| Tdicoccoides_TRIDC5BG001180.4 TRIDC5BG001180.4 |
Low | No | 2985 | OG0000476 | Get ORF Coding potential... Type: noncoding Potential: -1.198 Folding energies... MFEI: -28.831 AMFE: -0.685 GC content %: 42.077 | |
| Tdicoccoides_TRIDC5BG001180.5 TRIDC5BG001180.5 |
Low | No | 2040 | OG0000476 | Get ORF Coding potential... Type: noncoding Potential: -1.151 Folding energies... MFEI: -27.412 AMFE: -0.679 GC content %: 40.343 | |
| Tdicoccoides_TRIDC5BG001180.6 TRIDC5BG001180.6 |
Low | No | 2172 | OG0000476 | Get ORF Coding potential... Type: noncoding Potential: -1.233 Folding energies... MFEI: -30.267 AMFE: -0.679 GC content %: 44.567 | |
| Tdicoccoides_TRIDC5BG001180.7 TRIDC5BG001180.7 |
High | No | 998 | OG0000476 | Get ORF Coding potential... Type: noncoding Potential: -1.196 Folding energies... MFEI: -30.852 AMFE: -0.635 GC content %: 48.597 | |
| Tdicoccoides_TRIDC5BG001180.8 TRIDC5BG001180.8 |
High | No | 943 | OG0000476 | Get ORF Coding potential... Type: noncoding Potential: -1.307 Folding energies... MFEI: -27.656 AMFE: -0.602 GC content %: 45.917 | |
| Tdicoccoides_TRIDC5BG001180.9 TRIDC5BG001180.9 |
High | No | 703 | OG0000476 | Get ORF Coding potential... Type: noncoding Potential: -1.177 Folding energies... MFEI: -27.937 AMFE: -0.604 GC content %: 46.230 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC5BG001180.3 | SwissProt | 2021-04-01 | Q93VB8 | 1.08e-7 |
| Tdicoccoides_TRIDC5BG001180.4 | SwissProt | 2021-04-01 | O23614 | 5.92e-6 |
| Tdicoccoides_TRIDC5BG001180.5 | SwissProt | 2021-04-01 | O23614 | 3.57e-6 |
| Tdicoccoides_TRIDC5BG001180.6 | SwissProt | 2021-04-01 | O23614 | 8.02e-7 |
| Tdicoccoides_TRIDC5BG001180.2 | SwissProt | 2021-04-01 | Q93VB8 | 4.8e-9 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
