GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Tdicoccoides_TRIDC5BG003990 [ TRIDC5BG003990]	5B	22816232	22820432	v1	Triticum dicoccoides (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Tdicoccoides_TRIDC5BG003990.1 TRIDC5BG003990.1	High	No	375	OG0362890		Get ORF Coding potential... Type: noncoding Potential: -1.011 Folding energies... MFEI: -25.227 AMFE: -0.503 GC content %: 50.133
Tdicoccoides_TRIDC5BG003990.4 TRIDC5BG003990.4	Low	No	1507	OG0362891		Get ORF Coding potential... Type: noncoding Potential: -0.136 Folding energies... MFEI: -32.183 AMFE: -0.627 GC content %: 51.360

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
Tdicoccoides_TRIDC5BG003990.4	SwissProt	2021-04-01	O48788	1.13e-14

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).