GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Tdicoccoides_TRIDC5BG016140 [ TRIDC5BG016140]	5B	133528097	133534549	v1	Triticum dicoccoides (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Tdicoccoides_TRIDC5BG016140.1 TRIDC5BG016140.1	High	No	559	OG0015377		Get ORF Coding potential... Type: noncoding Potential: -0.976 Folding energies... MFEI: -34.329 AMFE: -0.607 GC content %: 56.530
Tdicoccoides_TRIDC5BG016140.2 TRIDC5BG016140.2	High	No	669	OG0015377		Get ORF Coding potential... Type: noncoding Potential: -0.943 Folding energies... MFEI: -32.930 AMFE: -0.610 GC content %: 53.961
Tdicoccoides_TRIDC5BG016140.3 TRIDC5BG016140.3	High	No	461	OG0015377		Get ORF Coding potential... Type: noncoding Potential: -0.881 Folding energies... MFEI: -34.295 AMFE: -0.635 GC content %: 54.013
Tdicoccoides_TRIDC5BG016140.4 TRIDC5BG016140.4	High	No	721	OG0015377		Get ORF Coding potential... Type: noncoding Potential: -0.928 Folding energies... MFEI: -24.785 AMFE: -0.552 GC content %: 44.938

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).