GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Tdicoccoides_TRIDC5BG018270 [ TRIDC5BG018270]	5B	158922425	158929740	v1	Triticum dicoccoides (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Tdicoccoides_TRIDC5BG018270.1 TRIDC5BG018270.1	High	No	1228	OG0363119		Get ORF Coding potential... Type: noncoding Potential: -0.593 Folding energies... MFEI: -23.632 AMFE: -0.571 GC content %: 41.368
Tdicoccoides_TRIDC5BG018270.13 TRIDC5BG018270.13	High	No	747	OG0363120		Get ORF Coding potential... Type: noncoding Potential: -1.213 Folding energies... MFEI: -14.378 AMFE: -0.431 GC content %: 33.333
Tdicoccoides_TRIDC5BG018270.2 TRIDC5BG018270.2	High	No	895	OG0363121		Get ORF Coding potential... Type: noncoding Potential: -0.826 Folding energies... MFEI: -21.721 AMFE: -0.570 GC content %: 38.101
Tdicoccoides_TRIDC5BG018270.9 TRIDC5BG018270.9	High	No	764	OG0363122		Get ORF Coding potential... Type: noncoding Potential: -0.269 Folding energies... MFEI: -22.094 AMFE: -0.574 GC content %: 38.482

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).