Tdicoccoides TRIDC5BG020410
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC5BG020410 [ TRIDC5BG020410] |
5B | 211266197 | 211270437 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC5BG020410.1 TRIDC5BG020410.1 |
High | No | 2028 | OG0000668 | Get ORF Coding potential... Type: noncoding Potential: -1.062 Folding energies... MFEI: -28.107 AMFE: -0.678 GC content %: 41.469 | |
| Tdicoccoides_TRIDC5BG020410.10 TRIDC5BG020410.10 |
High | No | 2175 | OG0000668 | Get ORF Coding potential... Type: noncoding Potential: -1.187 Folding energies... MFEI: -27.954 AMFE: -0.689 GC content %: 40.598 | |
| Tdicoccoides_TRIDC5BG020410.11 TRIDC5BG020410.11 |
High | No | 1431 | OG0000668 | Get ORF Coding potential... Type: noncoding Potential: -1.271 Folding energies... MFEI: -28.924 AMFE: -0.688 GC content %: 42.068 | |
| Tdicoccoides_TRIDC5BG020410.12 TRIDC5BG020410.12 |
High | No | 2183 | OG0000668 | Get ORF Coding potential... Type: noncoding Potential: -1.294 Folding energies... MFEI: -28.094 AMFE: -0.695 GC content %: 40.403 | |
| Tdicoccoides_TRIDC5BG020410.13 TRIDC5BG020410.13 |
High | No | 2194 | OG0000668 | Get ORF Coding potential... Type: noncoding Potential: -1.294 Folding energies... MFEI: -27.871 AMFE: -0.692 GC content %: 40.292 | |
| Tdicoccoides_TRIDC5BG020410.14 TRIDC5BG020410.14 |
High | No | 2078 | OG0000668 | Get ORF Coding potential... Type: noncoding Potential: -1.291 Folding energies... MFEI: -28.345 AMFE: -0.699 GC content %: 40.568 | |
| Tdicoccoides_TRIDC5BG020410.15 TRIDC5BG020410.15 |
High | No | 1894 | OG0000668 | Get ORF Coding potential... Type: noncoding Potential: -1.091 Folding energies... MFEI: -28.622 AMFE: -0.698 GC content %: 41.024 | |
| Tdicoccoides_TRIDC5BG020410.16 TRIDC5BG020410.16 |
High | No | 2362 | OG0000668 | Get ORF Coding potential... Type: noncoding Potential: -1.193 Folding energies... MFEI: -27.824 AMFE: -0.698 GC content %: 39.839 | |
| Tdicoccoides_TRIDC5BG020410.17 TRIDC5BG020410.17 |
High | No | 1945 | OG0000668 | Get ORF Coding potential... Type: noncoding Potential: -1.288 Folding energies... MFEI: -28.257 AMFE: -0.691 GC content %: 40.874 | |
| Tdicoccoides_TRIDC5BG020410.18 TRIDC5BG020410.18 |
High | No | 2314 | OG0000668 | Get ORF Coding potential... Type: noncoding Potential: -1.296 Folding energies... MFEI: -27.956 AMFE: -0.700 GC content %: 39.931 | |
| Tdicoccoides_TRIDC5BG020410.2 TRIDC5BG020410.2 |
High | No | 2486 | OG0000668 | Get ORF Coding potential... Type: noncoding Potential: -1.299 Folding energies... MFEI: -27.711 AMFE: -0.686 GC content %: 40.386 | |
| Tdicoccoides_TRIDC5BG020410.3 TRIDC5BG020410.3 |
High | No | 2450 | OG0000668 | Get ORF Coding potential... Type: noncoding Potential: -1.196 Folding energies... MFEI: -27.771 AMFE: -0.694 GC content %: 40.000 | |
| Tdicoccoides_TRIDC5BG020410.4 TRIDC5BG020410.4 |
High | No | 2042 | OG0000668 | Get ORF Coding potential... Type: noncoding Potential: -1.206 Folding energies... MFEI: -28.012 AMFE: -0.692 GC content %: 40.451 | |
| Tdicoccoides_TRIDC5BG020410.5 TRIDC5BG020410.5 |
High | No | 1851 | OG0000668 | Get ORF Coding potential... Type: noncoding Potential: -1.055 Folding energies... MFEI: -28.476 AMFE: -0.690 GC content %: 41.275 | |
| Tdicoccoides_TRIDC5BG020410.6 TRIDC5BG020410.6 |
High | No | 2255 | OG0000668 | Get ORF Coding potential... Type: noncoding Potential: -1.295 Folding energies... MFEI: -27.831 AMFE: -0.693 GC content %: 40.177 | |
| Tdicoccoides_TRIDC5BG020410.7 TRIDC5BG020410.7 |
High | No | 1765 | OG0000668 | Get ORF Coding potential... Type: noncoding Potential: -1.051 Folding energies... MFEI: -28.550 AMFE: -0.687 GC content %: 41.530 | |
| Tdicoccoides_TRIDC5BG020410.8 TRIDC5BG020410.8 |
High | No | 2184 | OG0000668 | Get ORF Coding potential... Type: noncoding Potential: -1.294 Folding energies... MFEI: -27.729 AMFE: -0.690 GC content %: 40.201 | |
| Tdicoccoides_TRIDC5BG020410.9 TRIDC5BG020410.9 |
High | No | 1886 | OG0000668 | Get ORF Coding potential... Type: noncoding Potential: -1.090 Folding energies... MFEI: -28.351 AMFE: -0.692 GC content %: 40.986 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
