GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Tdicoccoides_TRIDC5BG020710 [ TRIDC5BG020710]	5B	214373684	214377945	v1	Triticum dicoccoides (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Tdicoccoides_TRIDC5BG020710.10 TRIDC5BG020710.10	High	No	890	OG0000473		Get ORF Coding potential... Type: noncoding Potential: -0.285 Folding energies... MFEI: -30.753 AMFE: -0.638 GC content %: 48.202
Tdicoccoides_TRIDC5BG020710.11 TRIDC5BG020710.11	High	No	2354	OG0006666		Get ORF Coding potential... Type: noncoding Potential: -0.478 Folding energies... MFEI: -29.625 AMFE: -0.622 GC content %: 47.621
Tdicoccoides_TRIDC5BG020710.12 TRIDC5BG020710.12	High	No	2256	OG0006666		Get ORF Coding potential... Type: noncoding Potential: -0.472 Folding energies... MFEI: -30.216 AMFE: -0.628 GC content %: 48.094
Tdicoccoides_TRIDC5BG020710.13 TRIDC5BG020710.13	High	No	2173	OG0006666		Get ORF Coding potential... Type: noncoding Potential: -0.467 Folding energies... MFEI: -30.321 AMFE: -0.629 GC content %: 48.228
Tdicoccoides_TRIDC5BG020710.14 TRIDC5BG020710.14	High	No	1156	OG0006666		Get ORF Coding potential... Type: noncoding Potential: -0.350 Folding energies... MFEI: -35.346 AMFE: -0.625 GC content %: 56.574
Tdicoccoides_TRIDC5BG020710.15 TRIDC5BG020710.15	High	No	1332	OG0000473		Get ORF Coding potential... Type: noncoding Potential: -0.381 Folding energies... MFEI: -34.129 AMFE: -0.647 GC content %: 52.778
Tdicoccoides_TRIDC5BG020710.7 TRIDC5BG020710.7	Low	No	1654	OG0006666		Get ORF Coding potential... Type: noncoding Potential: -0.023 Folding energies... MFEI: -26.322 AMFE: -0.634 GC content %: 41.536
Tdicoccoides_TRIDC5BG020710.9 TRIDC5BG020710.9	High	No	2621	OG0006666		Get ORF Coding potential... Type: noncoding Potential: -0.491 Folding energies... MFEI: -29.484 AMFE: -0.627 GC content %: 47.043

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
Tdicoccoides_TRIDC5BG020710.7	SwissProt	2021-04-01	Q9FIK0	3.17e-29

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).