Tdicoccoides TRIDC5BG020830
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC5BG020830 [ TRIDC5BG020830] |
5B | 217339963 | 217344715 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC5BG020830.1 TRIDC5BG020830.1 |
Low | No | 1265 | OG0003765 | Get ORF Coding potential... Type: noncoding Potential: -0.951 Folding energies... MFEI: -25.534 AMFE: -0.645 GC content %: 39.605 | |
| Tdicoccoides_TRIDC5BG020830.2 TRIDC5BG020830.2 |
Low | No | 2350 | OG0003765 | Get ORF Coding potential... Type: noncoding Potential: -0.910 Folding energies... MFEI: -30.519 AMFE: -0.663 GC content %: 46.043 | |
| Tdicoccoides_TRIDC5BG020830.3 TRIDC5BG020830.3 |
Low | No | 2398 | OG0003765 | Get ORF Coding potential... Type: noncoding Potential: -0.911 Folding energies... MFEI: -28.578 AMFE: -0.649 GC content %: 44.037 | |
| Tdicoccoides_TRIDC5BG020830.4 TRIDC5BG020830.4 |
High | No | 1076 | OG0003765 | Get ORF Coding potential... Type: noncoding Potential: -1.065 Folding energies... MFEI: -26.162 AMFE: -0.664 GC content %: 39.405 | |
| Tdicoccoides_TRIDC5BG020830.5 TRIDC5BG020830.5 |
High | No | 1838 | OG0003765 | Get ORF Coding potential... Type: noncoding Potential: -0.887 Folding energies... MFEI: -30.849 AMFE: -0.656 GC content %: 47.008 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC5BG020830.3 | RepBase (RepeatMasker) | 2014-01-31 | SINE; Unknown | |
| Tdicoccoides_TRIDC5BG020830.1 | RepBase (RepeatMasker) | 2014-01-31 | SINE; Unknown | |
| Tdicoccoides_TRIDC5BG020830.2 | RepBase (RepeatMasker) | 2014-01-31 | SINE; tRNA; Unknown |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
