Tdicoccoides TRIDC5BG022700
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC5BG022700 [ TRIDC5BG022700] |
5B | 245016324 | 245025670 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC5BG022700.1 TRIDC5BG022700.1 |
Low | No | 263 | OG0363173 | Get ORF Coding potential... Type: noncoding Potential: -0.838 Folding energies... MFEI: -19.087 AMFE: -0.502 GC content %: 38.023 | |
| Tdicoccoides_TRIDC5BG022700.11 TRIDC5BG022700.11 |
Low | No | 2324 | OG0009473 | Get ORF Coding potential... Type: noncoding Potential: -0.960 Folding energies... MFEI: -28.451 AMFE: -0.665 GC content %: 42.814 | |
| Tdicoccoides_TRIDC5BG022700.12 TRIDC5BG022700.12 |
Low | No | 2552 | OG0009473 | Get ORF Coding potential... Type: noncoding Potential: -1.019 Folding energies... MFEI: -30.643 AMFE: -0.682 GC content %: 44.945 | |
| Tdicoccoides_TRIDC5BG022700.13 TRIDC5BG022700.13 |
Low | No | 3402 | OG0009473 | Get ORF Coding potential... Type: noncoding Potential: -1.033 Folding energies... MFEI: -31.317 AMFE: -0.679 GC content %: 46.091 | |
| Tdicoccoides_TRIDC5BG022700.14 TRIDC5BG022700.14 |
High | No | 1687 | OG0009473 | Get ORF Coding potential... Type: noncoding Potential: -1.308 Folding energies... MFEI: -33.906 AMFE: -0.666 GC content %: 50.919 | |
| Tdicoccoides_TRIDC5BG022700.15 TRIDC5BG022700.15 |
High | No | 1545 | OG0009473 | Get ORF Coding potential... Type: noncoding Potential: -1.301 Folding energies... MFEI: -32.557 AMFE: -0.663 GC content %: 49.126 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC5BG022700.13 | SwissProt | 2021-04-01 | Q9ZVJ3 | 6.04e-5 |
| Tdicoccoides_TRIDC5BG022700.12 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
| Tdicoccoides_TRIDC5BG022700.13 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
| Tdicoccoides_TRIDC5BG022700.1 | SwissProt | 2021-04-01 | Q9FLP0 | 3.07e-10 |
| Tdicoccoides_TRIDC5BG022700.11 | SwissProt | 2021-04-01 | Q9ZVJ3 | 1.06e-5 |
| Tdicoccoides_TRIDC5BG022700.12 | SwissProt | 2021-04-01 | Q9ZVJ3 | 4.23e-5 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
