Tdicoccoides TRIDC5BG031310
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC5BG031310 [ TRIDC5BG031310] |
5B | 338770586 | 338772907 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC5BG031310.1 TRIDC5BG031310.1 |
Low | No | 2114 | OG0003596 | Get ORF Coding potential... Type: noncoding Potential: -0.321 Folding energies... MFEI: -25.407 AMFE: -0.601 GC content %: 42.289 | |
| Tdicoccoides_TRIDC5BG031310.2 TRIDC5BG031310.2 |
Low | No | 1996 | OG0003596 | Get ORF Coding potential... Type: noncoding Potential: -0.315 Folding energies... MFEI: -24.424 AMFE: -0.580 GC content %: 42.134 | |
| Tdicoccoides_TRIDC5BG031310.3 TRIDC5BG031310.3 |
Low | No | 2289 | OG0003596 | Get ORF Coding potential... Type: noncoding Potential: -0.330 Folding energies... MFEI: -24.976 AMFE: -0.599 GC content %: 41.678 | |
| Tdicoccoides_TRIDC5BG031310.4 TRIDC5BG031310.4 |
Low | No | 2179 | OG0003596 | Get ORF Coding potential... Type: noncoding Potential: -0.325 Folding energies... MFEI: -25.025 AMFE: -0.596 GC content %: 41.992 | |
| Tdicoccoides_TRIDC5BG031310.5 TRIDC5BG031310.5 |
Low | No | 2129 | OG0003596 | Get ORF Coding potential... Type: noncoding Potential: -0.322 Folding energies... MFEI: -25.045 AMFE: -0.598 GC content %: 41.851 | |
| Tdicoccoides_TRIDC5BG031310.6 TRIDC5BG031310.6 |
Low | No | 2019 | OG0003596 | Get ORF Coding potential... Type: noncoding Potential: -0.316 Folding energies... MFEI: -25.062 AMFE: -0.594 GC content %: 42.199 | |
| Tdicoccoides_TRIDC5BG031310.7 TRIDC5BG031310.7 |
Low | No | 1605 | OG0003596 | Get ORF Coding potential... Type: noncoding Potential: -0.295 Folding energies... MFEI: -24.654 AMFE: -0.602 GC content %: 40.935 | |
| Tdicoccoides_TRIDC5BG031310.8 TRIDC5BG031310.8 |
Low | No | 1554 | OG0003596 | Get ORF Coding potential... Type: noncoding Potential: -0.287 Folding energies... MFEI: -25.245 AMFE: -0.600 GC content %: 42.085 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC5BG031310.1 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Tdicoccoides_TRIDC5BG031310.4 | SwissProt | 2021-04-01 | Q5PNS0 | 1.11e-11 |
| Tdicoccoides_TRIDC5BG031310.2 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Tdicoccoides_TRIDC5BG031310.5 | SwissProt | 2021-04-01 | Q5PNS0 | 1.08e-11 |
| Tdicoccoides_TRIDC5BG031310.3 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Tdicoccoides_TRIDC5BG031310.6 | SwissProt | 2021-04-01 | Q5PNS0 | 1.01e-11 |
| Tdicoccoides_TRIDC5BG031310.1 | SwissProt | 2021-04-01 | Q5PNS0 | 1.07e-11 |
| Tdicoccoides_TRIDC5BG031310.4 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Tdicoccoides_TRIDC5BG031310.7 | SwissProt | 2021-04-01 | Q5PNS0 | 7.72e-12 |
| Tdicoccoides_TRIDC5BG031310.2 | SwissProt | 2021-04-01 | Q5PNS0 | 9.96e-12 |
... further results
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
