GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Tdicoccoides_TRIDC5BG037020 [ TRIDC5BG037020]	5B	401942455	401946145	v1	Triticum dicoccoides (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Tdicoccoides_TRIDC5BG037020.1 TRIDC5BG037020.1	High	No	983	OG0062408		Get ORF Coding potential... Type: noncoding Potential: -0.905 Folding energies... MFEI: -31.109 AMFE: -0.606 GC content %: 51.373
Tdicoccoides_TRIDC5BG037020.2 TRIDC5BG037020.2	High	No	819	OG0062408		Get ORF Coding potential... Type: noncoding Potential: -0.798 Folding energies... MFEI: -38.474 AMFE: -0.676 GC content %: 56.899
Tdicoccoides_TRIDC5BG037020.3 TRIDC5BG037020.3	High	No	949	OG0363388		Get ORF Coding potential... Type: noncoding Potential: -0.983 Folding energies... MFEI: -26.881 AMFE: -0.631 GC content %: 42.571

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).