Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Tdicoccoides_TRIDC5BG037070 [ TRIDC5BG037070] |
5B | 402224748 | 402239914 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Tdicoccoides_TRIDC5BG037070.11 TRIDC5BG037070.11 |
High | No | 646 | OG0010069 | Get ORF Coding potential... Type: noncoding Potential: -0.290 Folding energies... MFEI: -27.771 AMFE: -0.608 GC content %: 45.666 | |
Tdicoccoides_TRIDC5BG037070.14 TRIDC5BG037070.14 |
Low | No | 2070 | OG0062409 | Get ORF Coding potential... Type: noncoding Potential: -0.078 Folding energies... MFEI: -32.300 AMFE: -0.673 GC content %: 47.971 | |
Tdicoccoides_TRIDC5BG037070.16 TRIDC5BG037070.16 |
Low | No | 1235 | OG0062409 | Get ORF Coding potential... Type: noncoding Potential: -0.227 Folding energies... MFEI: -26.834 AMFE: -0.611 GC content %: 43.887 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Tdicoccoides_TRIDC5BG037070.14 | SwissProt | 2021-04-01 | Q9BU70 | 4.07e-14 |
Tdicoccoides_TRIDC5BG037070.16 | SwissProt | 2021-04-01 | Q9BU70 | 2.9e-12 |