Tdicoccoides TRIDC5BG042790
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC5BG042790 [ TRIDC5BG042790] |
5B | 449072539 | 449081165 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC5BG042790.1 TRIDC5BG042790.1 |
Low | Yes | 3633 | OG0002273 | Get ORF Coding potential... Type: noncoding Potential: -0.098 Folding energies... MFEI: -25.582 AMFE: -0.688 GC content %: 37.159 | |
| Tdicoccoides_TRIDC5BG042790.10 TRIDC5BG042790.10 |
High | No | 1163 | OG0002273 | Get ORF Coding potential... Type: noncoding Potential: -1.434 Folding energies... MFEI: -24.282 AMFE: -0.595 GC content %: 40.843 | |
| Tdicoccoides_TRIDC5BG042790.2 TRIDC5BG042790.2 |
Low | Yes | 7225 | OG0002273 | Get ORF Coding potential... Type: noncoding Potential: -0.024 Folding energies... MFEI: -51.999 AMFE: -1.473 GC content %: 35.308 | |
| Tdicoccoides_TRIDC5BG042790.3 TRIDC5BG042790.3 |
High | No | 1610 | OG0002273 | Get ORF Coding potential... Type: noncoding Potential: -0.403 Folding energies... MFEI: -27.317 AMFE: -0.646 GC content %: 42.298 | |
| Tdicoccoides_TRIDC5BG042790.4 TRIDC5BG042790.4 |
High | No | 1579 | OG0002273 | Get ORF Coding potential... Type: noncoding Potential: -1.280 Folding energies... MFEI: -31.773 AMFE: -0.745 GC content %: 42.622 | |
| Tdicoccoides_TRIDC5BG042790.5 TRIDC5BG042790.5 |
High | No | 1200 | OG0002273 | Get ORF Coding potential... Type: noncoding Potential: -1.327 Folding energies... MFEI: -34.925 AMFE: -0.752 GC content %: 46.417 | |
| Tdicoccoides_TRIDC5BG042790.6 TRIDC5BG042790.6 |
Low | Yes | 1195 | OG0002273 | Get ORF Coding potential... Type: noncoding Potential: -1.326 Folding energies... MFEI: -37.431 AMFE: -0.827 GC content %: 45.272 | |
| Tdicoccoides_TRIDC5BG042790.7 TRIDC5BG042790.7 |
Low | Yes | 1768 | OG0002273 | Get ORF Coding potential... Type: noncoding Potential: -1.286 Folding energies... MFEI: -33.954 AMFE: -0.808 GC content %: 42.025 | |
| Tdicoccoides_TRIDC5BG042790.8 TRIDC5BG042790.8 |
High | No | 727 | OG0002273 | Get ORF Coding potential... Type: noncoding Potential: -1.283 Folding energies... MFEI: -34.044 AMFE: -0.796 GC content %: 42.779 | |
| Tdicoccoides_TRIDC5BG042790.9 TRIDC5BG042790.9 |
Low | No | 841 | OG0002273 | Get ORF Coding potential... Type: noncoding Potential: -0.377 Folding energies... MFEI: -23.246 AMFE: -0.613 GC content %: 37.931 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC5BG042790.1 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Tip100 | |
| Tdicoccoides_TRIDC5BG042790.9 | SwissProt | 2021-04-01 | C0LGU5 | 3.26e-15 |
| Tdicoccoides_TRIDC5BG042790.2 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Tip100 | |
| Tdicoccoides_TRIDC5BG042790.1 | Rfam | 14.6 | MIR1122 | 2.3e-8 |
| Tdicoccoides_TRIDC5BG042790.2 | Rfam | 14.6 | MIR1122 | 4.6e-8 |
| Tdicoccoides_TRIDC5BG042790.6 | Rfam | 14.6 | mir-142 | 3.4e-5 |
| Tdicoccoides_TRIDC5BG042790.1 | SwissProt | 2021-04-01 | C0LGX1 | 4.45e-22 |
| Tdicoccoides_TRIDC5BG042790.7 | Rfam | 14.6 | mir-142 | 5.0e-5 |
| Tdicoccoides_TRIDC5BG042790.2 | SwissProt | 2021-04-01 | C0LGX1 | 9.02e-22 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
