Tdicoccoides TRIDC5BG048490
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC5BG048490 [ TRIDC5BG048490] |
5B | 486393248 | 486397350 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC5BG048490.1 TRIDC5BG048490.1 |
Low | No | 1320 | OG0015387 | Get ORF Coding potential... Type: noncoding Potential: -1.059 Folding energies... MFEI: -32.523 AMFE: -0.626 GC content %: 51.970 | |
| Tdicoccoides_TRIDC5BG048490.3 TRIDC5BG048490.3 |
High | No | 1297 | OG0015387 | Get ORF Coding potential... Type: noncoding Potential: -1.057 Folding energies... MFEI: -32.028 AMFE: -0.632 GC content %: 50.655 | |
| Tdicoccoides_TRIDC5BG048490.5 TRIDC5BG048490.5 |
High | No | 890 | OG0015387 | Get ORF Coding potential... Type: noncoding Potential: -1.009 Folding energies... MFEI: -30.146 AMFE: -0.620 GC content %: 48.652 | |
| Tdicoccoides_TRIDC5BG048490.6 TRIDC5BG048490.6 |
Low | Yes | 996 | OG0015387 | Get ORF Coding potential... Type: noncoding Potential: -1.025 Folding energies... MFEI: -31.285 AMFE: -0.679 GC content %: 46.084 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC5BG048490.6 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
| Tdicoccoides_TRIDC5BG048490.1 | SwissProt | 2021-04-01 | Q55DL2 | 9.06e-5 |
| Tdicoccoides_TRIDC5BG048490.6 | Rfam | 14.6 | MIR1122 | 6.5e-8 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
