Tdicoccoides TRIDC5BG051870
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC5BG051870 [ TRIDC5BG051870] |
5B | 514558952 | 514562473 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC5BG051870.1 TRIDC5BG051870.1 |
High | No | 568 | OG0000384 | Get ORF Coding potential... Type: noncoding Potential: -0.840 Folding energies... MFEI: -25.968 AMFE: -0.625 GC content %: 41.549 | |
| Tdicoccoides_TRIDC5BG051870.10 TRIDC5BG051870.10 |
Low | No | 2467 | OG0000384 | Get ORF Coding potential... Type: noncoding Potential: -1.289 Folding energies... MFEI: -26.664 AMFE: -0.647 GC content %: 41.184 | |
| Tdicoccoides_TRIDC5BG051870.11 TRIDC5BG051870.11 |
High | No | 2525 | OG0000384 | Get ORF Coding potential... Type: noncoding Potential: -1.290 Folding energies... MFEI: -26.903 AMFE: -0.653 GC content %: 41.188 | |
| Tdicoccoides_TRIDC5BG051870.12 TRIDC5BG051870.12 |
High | No | 1568 | OG0000384 | Get ORF Coding potential... Type: noncoding Potential: -1.335 Folding energies... MFEI: -27.781 AMFE: -0.661 GC content %: 42.028 | |
| Tdicoccoides_TRIDC5BG051870.13 TRIDC5BG051870.13 |
High | No | 1632 | OG0000384 | Get ORF Coding potential... Type: noncoding Potential: -1.354 Folding energies... MFEI: -28.487 AMFE: -0.655 GC content %: 43.505 | |
| Tdicoccoides_TRIDC5BG051870.14 TRIDC5BG051870.14 |
High | No | 1678 | OG0000384 | Get ORF Coding potential... Type: noncoding Potential: -1.339 Folding energies... MFEI: -27.211 AMFE: -0.649 GC content %: 41.955 | |
| Tdicoccoides_TRIDC5BG051870.15 TRIDC5BG051870.15 |
Low | No | 2036 | OG0000384 | Get ORF Coding potential... Type: noncoding Potential: -1.277 Folding energies... MFEI: -26.842 AMFE: -0.654 GC content %: 41.061 | |
| Tdicoccoides_TRIDC5BG051870.16 TRIDC5BG051870.16 |
High | No | 1663 | OG0000384 | Get ORF Coding potential... Type: noncoding Potential: -1.339 Folding energies... MFEI: -27.048 AMFE: -0.644 GC content %: 41.972 | |
| Tdicoccoides_TRIDC5BG051870.17 TRIDC5BG051870.17 |
High | No | 2144 | OG0000384 | Get ORF Coding potential... Type: noncoding Potential: -1.281 Folding energies... MFEI: -26.707 AMFE: -0.648 GC content %: 41.185 | |
| Tdicoccoides_TRIDC5BG051870.18 TRIDC5BG051870.18 |
High | No | 1340 | OG0000384 | Get ORF Coding potential... Type: noncoding Potential: -1.364 Folding energies... MFEI: -28.418 AMFE: -0.660 GC content %: 43.060 | |
| Tdicoccoides_TRIDC5BG051870.19 TRIDC5BG051870.19 |
Low | No | 2217 | OG0000384 | Get ORF Coding potential... Type: noncoding Potential: -1.283 Folding energies... MFEI: -27.037 AMFE: -0.652 GC content %: 41.452 | |
| Tdicoccoides_TRIDC5BG051870.2 TRIDC5BG051870.2 |
High | No | 2076 | OG0000384 | Get ORF Coding potential... Type: noncoding Potential: -1.007 Folding energies... MFEI: -27.625 AMFE: -0.662 GC content %: 41.715 | |
| Tdicoccoides_TRIDC5BG051870.20 TRIDC5BG051870.20 |
High | No | 1862 | OG0000384 | Get ORF Coding potential... Type: noncoding Potential: -1.344 Folding energies... MFEI: -27.492 AMFE: -0.649 GC content %: 42.374 | |
| Tdicoccoides_TRIDC5BG051870.22 TRIDC5BG051870.22 |
High | No | 1265 | OG0000384 | Get ORF Coding potential... Type: noncoding Potential: -1.238 Folding energies... MFEI: -27.391 AMFE: -0.646 GC content %: 42.372 | |
| Tdicoccoides_TRIDC5BG051870.23 TRIDC5BG051870.23 |
High | No | 1862 | OG0000384 | Get ORF Coding potential... Type: noncoding Potential: -1.344 Folding energies... MFEI: -27.449 AMFE: -0.648 GC content %: 42.374 | |
| Tdicoccoides_TRIDC5BG051870.24 TRIDC5BG051870.24 |
High | No | 2382 | OG0000384 | Get ORF Coding potential... Type: noncoding Potential: -1.287 Folding energies... MFEI: -27.154 AMFE: -0.656 GC content %: 41.394 | |
| Tdicoccoides_TRIDC5BG051870.3 TRIDC5BG051870.3 |
High | No | 2795 | OG0000384 | Get ORF Coding potential... Type: noncoding Potential: -1.237 Folding energies... MFEI: -26.959 AMFE: -0.658 GC content %: 40.966 | |
| Tdicoccoides_TRIDC5BG051870.4 TRIDC5BG051870.4 |
High | No | 1702 | OG0000384 | Get ORF Coding potential... Type: noncoding Potential: -1.194 Folding energies... MFEI: -29.624 AMFE: -0.686 GC content %: 43.184 | |
| Tdicoccoides_TRIDC5BG051870.5 TRIDC5BG051870.5 |
High | No | 1766 | OG0000384 | Get ORF Coding potential... Type: noncoding Potential: -1.267 Folding energies... MFEI: -27.446 AMFE: -0.653 GC content %: 42.016 | |
| Tdicoccoides_TRIDC5BG051870.6 TRIDC5BG051870.6 |
High | No | 2642 | OG0000384 | Get ORF Coding potential... Type: noncoding Potential: -1.293 Folding energies... MFEI: -26.593 AMFE: -0.647 GC content %: 41.105 | |
| Tdicoccoides_TRIDC5BG051870.7 TRIDC5BG051870.7 |
High | No | 1609 | OG0000384 | Get ORF Coding potential... Type: noncoding Potential: -1.310 Folding energies... MFEI: -27.321 AMFE: -0.657 GC content %: 41.579 | |
| Tdicoccoides_TRIDC5BG051870.8 TRIDC5BG051870.8 |
High | No | 2065 | OG0000384 | Get ORF Coding potential... Type: noncoding Potential: -1.278 Folding energies... MFEI: -27.114 AMFE: -0.657 GC content %: 41.259 | |
| Tdicoccoides_TRIDC5BG051870.9 TRIDC5BG051870.9 |
High | No | 2395 | OG0000384 | Get ORF Coding potential... Type: noncoding Potential: -1.287 Folding energies... MFEI: -26.334 AMFE: -0.648 GC content %: 40.626 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC5BG051870.15 | SwissProt | 2021-04-01 | Q9M081 | 3.76e-4 |
| Tdicoccoides_TRIDC5BG051870.19 | SwissProt | 2021-04-01 | Q9M081 | 4.21e-4 |
| Tdicoccoides_TRIDC5BG051870.10 | SwissProt | 2021-04-01 | Q9M081 | 7.6e-4 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
