Tdicoccoides TRIDC5BG072640
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC5BG072640 [ TRIDC5BG072640] |
5B | 655413399 | 655419281 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC5BG072640.1 TRIDC5BG072640.1 |
High | No | 1836 | OG0000138 | Get ORF Coding potential... Type: noncoding Potential: -1.176 Folding energies... MFEI: -25.496 AMFE: -0.633 GC content %: 40.251 | |
| Tdicoccoides_TRIDC5BG072640.10 TRIDC5BG072640.10 |
High | No | 952 | OG0000138 | Get ORF Coding potential... Type: noncoding Potential: -1.144 Folding energies... MFEI: -25.777 AMFE: -0.610 GC content %: 42.227 | |
| Tdicoccoides_TRIDC5BG072640.11 TRIDC5BG072640.11 |
High | No | 2176 | OG0000138 | Get ORF Coding potential... Type: noncoding Potential: -1.201 Folding energies... MFEI: -24.959 AMFE: -0.637 GC content %: 39.154 | |
| Tdicoccoides_TRIDC5BG072640.12 TRIDC5BG072640.12 |
High | No | 1644 | OG0000138 | Get ORF Coding potential... Type: noncoding Potential: -1.255 Folding energies... MFEI: -25.791 AMFE: -0.631 GC content %: 40.876 | |
| Tdicoccoides_TRIDC5BG072640.13 TRIDC5BG072640.13 |
High | No | 1997 | OG0000138 | Get ORF Coding potential... Type: noncoding Potential: -1.122 Folding energies... MFEI: -24.256 AMFE: -0.637 GC content %: 38.057 | |
| Tdicoccoides_TRIDC5BG072640.14 TRIDC5BG072640.14 |
High | No | 1790 | OG0000138 | Get ORF Coding potential... Type: noncoding Potential: -1.314 Folding energies... MFEI: -24.810 AMFE: -0.629 GC content %: 39.441 | |
| Tdicoccoides_TRIDC5BG072640.15 TRIDC5BG072640.15 |
High | No | 1625 | OG0000138 | Get ORF Coding potential... Type: noncoding Potential: -1.307 Folding energies... MFEI: -24.480 AMFE: -0.625 GC content %: 39.138 | |
| Tdicoccoides_TRIDC5BG072640.16 TRIDC5BG072640.16 |
High | No | 2813 | OG0000138 | Get ORF Coding potential... Type: noncoding Potential: -1.080 Folding energies... MFEI: -27.860 AMFE: -0.677 GC content %: 41.166 | |
| Tdicoccoides_TRIDC5BG072640.17 TRIDC5BG072640.17 |
High | No | 3701 | OG0000138 | Get ORF Coding potential... Type: noncoding Potential: -1.115 Folding energies... MFEI: -26.414 AMFE: -0.677 GC content %: 39.044 | |
| Tdicoccoides_TRIDC5BG072640.18 TRIDC5BG072640.18 |
High | No | 3144 | OG0000138 | Get ORF Coding potential... Type: noncoding Potential: -1.110 Folding energies... MFEI: -27.201 AMFE: -0.677 GC content %: 40.172 | |
| Tdicoccoides_TRIDC5BG072640.19 TRIDC5BG072640.19 |
High | No | 2757 | OG0000138 | Get ORF Coding potential... Type: noncoding Potential: -1.230 Folding energies... MFEI: -25.005 AMFE: -0.660 GC content %: 37.904 | |
| Tdicoccoides_TRIDC5BG072640.2 TRIDC5BG072640.2 |
High | No | 1669 | OG0000138 | Get ORF Coding potential... Type: noncoding Potential: -1.309 Folding energies... MFEI: -25.039 AMFE: -0.629 GC content %: 39.784 | |
| Tdicoccoides_TRIDC5BG072640.20 TRIDC5BG072640.20 |
High | No | 1600 | OG0000138 | Get ORF Coding potential... Type: noncoding Potential: -1.306 Folding energies... MFEI: -25.506 AMFE: -0.626 GC content %: 40.750 | |
| Tdicoccoides_TRIDC5BG072640.21 TRIDC5BG072640.21 |
High | No | 1701 | OG0000138 | Get ORF Coding potential... Type: noncoding Potential: -1.260 Folding energies... MFEI: -25.697 AMFE: -0.642 GC content %: 40.035 | |
| Tdicoccoides_TRIDC5BG072640.22 TRIDC5BG072640.22 |
High | No | 2687 | OG0000138 | Get ORF Coding potential... Type: noncoding Potential: -1.104 Folding energies... MFEI: -27.119 AMFE: -0.672 GC content %: 40.380 | |
| Tdicoccoides_TRIDC5BG072640.23 TRIDC5BG072640.23 |
High | No | 2767 | OG0000138 | Get ORF Coding potential... Type: noncoding Potential: -1.231 Folding energies... MFEI: -27.268 AMFE: -0.671 GC content %: 40.622 | |
| Tdicoccoides_TRIDC5BG072640.24 TRIDC5BG072640.24 |
High | No | 2631 | OG0000138 | Get ORF Coding potential... Type: noncoding Potential: -1.104 Folding energies... MFEI: -27.358 AMFE: -0.676 GC content %: 40.479 | |
| Tdicoccoides_TRIDC5BG072640.3 TRIDC5BG072640.3 |
High | No | 2294 | OG0000138 | Get ORF Coding potential... Type: noncoding Potential: -1.208 Folding energies... MFEI: -24.669 AMFE: -0.641 GC content %: 38.492 | |
| Tdicoccoides_TRIDC5BG072640.4 TRIDC5BG072640.4 |
High | No | 2241 | OG0000138 | Get ORF Coding potential... Type: noncoding Potential: -1.327 Folding energies... MFEI: -24.489 AMFE: -0.645 GC content %: 37.974 | |
| Tdicoccoides_TRIDC5BG072640.5 TRIDC5BG072640.5 |
High | No | 1973 | OG0000138 | Get ORF Coding potential... Type: noncoding Potential: -0.930 Folding energies... MFEI: -28.256 AMFE: -0.662 GC content %: 42.676 | |
| Tdicoccoides_TRIDC5BG072640.6 TRIDC5BG072640.6 |
High | No | 2592 | OG0000138 | Get ORF Coding potential... Type: noncoding Potential: -0.962 Folding energies... MFEI: -27.562 AMFE: -0.677 GC content %: 40.741 | |
| Tdicoccoides_TRIDC5BG072640.7 TRIDC5BG072640.7 |
High | No | 2142 | OG0000138 | Get ORF Coding potential... Type: noncoding Potential: -0.941 Folding energies... MFEI: -28.235 AMFE: -0.659 GC content %: 42.857 | |
| Tdicoccoides_TRIDC5BG072640.8 TRIDC5BG072640.8 |
High | No | 2536 | OG0000138 | Get ORF Coding potential... Type: noncoding Potential: -0.959 Folding energies... MFEI: -27.236 AMFE: -0.665 GC content %: 40.931 | |
| Tdicoccoides_TRIDC5BG072640.9 TRIDC5BG072640.9 |
High | No | 1484 | OG0000138 | Get ORF Coding potential... Type: noncoding Potential: -1.139 Folding energies... MFEI: -24.333 AMFE: -0.620 GC content %: 39.218 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
