Tdicoccoides TRIDC5BG073160
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC5BG073160 [ TRIDC5BG073160] |
5B | 658764342 | 658765891 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC5BG073160.1 TRIDC5BG073160.1 |
High | No | 673 | OG0009482 | Get ORF Coding potential... Type: noncoding Potential: -1.076 Folding energies... MFEI: -27.875 AMFE: -0.586 GC content %: 47.548 | |
| Tdicoccoides_TRIDC5BG073160.2 TRIDC5BG073160.2 |
High | No | 677 | OG0009482 | Get ORF Coding potential... Type: noncoding Potential: -1.078 Folding energies... MFEI: -27.755 AMFE: -0.584 GC content %: 47.563 | |
| Tdicoccoides_TRIDC5BG073160.3 TRIDC5BG073160.3 |
High | No | 562 | OG0009482 | Get ORF Coding potential... Type: noncoding Potential: -1.026 Folding energies... MFEI: -30.996 AMFE: -0.597 GC content %: 51.957 | |
| Tdicoccoides_TRIDC5BG073160.4 TRIDC5BG073160.4 |
High | No | 558 | OG0009482 | Get ORF Coding potential... Type: noncoding Potential: -1.024 Folding energies... MFEI: -31.398 AMFE: -0.604 GC content %: 51.971 | |
| Tdicoccoides_TRIDC5BG073160.5 TRIDC5BG073160.5 |
High | No | 340 | OG0009482 | Get ORF Coding potential... Type: noncoding Potential: -0.885 Folding energies... MFEI: -27.294 AMFE: -0.584 GC content %: 46.765 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
