Tdicoccoides TRIDC6AG008570
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC6AG008570 [ TRIDC6AG008570] |
6A | 36861873 | 36864490 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC6AG008570.1 TRIDC6AG008570.1 |
High | No | 1131 | OG0004547 | Get ORF Coding potential... Type: noncoding Potential: -1.140 Folding energies... MFEI: -28.064 AMFE: -0.585 GC content %: 48.011 | |
| Tdicoccoides_TRIDC6AG008570.10 TRIDC6AG008570.10 |
High | No | 1557 | OG0002275 | Get ORF Coding potential... Type: noncoding Potential: -1.305 Folding energies... MFEI: -25.575 AMFE: -0.596 GC content %: 42.903 | |
| Tdicoccoides_TRIDC6AG008570.11 TRIDC6AG008570.11 |
High | No | 1521 | OG0002275 | Get ORF Coding potential... Type: noncoding Potential: -1.194 Folding energies... MFEI: -27.469 AMFE: -0.595 GC content %: 46.154 | |
| Tdicoccoides_TRIDC6AG008570.12 TRIDC6AG008570.12 |
High | No | 2346 | OG0002275 | Get ORF Coding potential... Type: noncoding Potential: -1.225 Folding energies... MFEI: -25.861 AMFE: -0.615 GC content %: 42.029 | |
| Tdicoccoides_TRIDC6AG008570.13 TRIDC6AG008570.13 |
High | No | 2329 | OG0002275 | Get ORF Coding potential... Type: noncoding Potential: -1.225 Folding energies... MFEI: -24.869 AMFE: -0.604 GC content %: 41.176 | |
| Tdicoccoides_TRIDC6AG008570.14 TRIDC6AG008570.14 |
High | No | 1029 | OG0004547 | Get ORF Coding potential... Type: noncoding Potential: -1.251 Folding energies... MFEI: -28.989 AMFE: -0.598 GC content %: 48.494 | |
| Tdicoccoides_TRIDC6AG008570.2 TRIDC6AG008570.2 |
High | No | 2618 | OG0002275 | Get ORF Coding potential... Type: noncoding Potential: -1.231 Folding energies... MFEI: -25.634 AMFE: -0.620 GC content %: 41.367 | |
| Tdicoccoides_TRIDC6AG008570.3 TRIDC6AG008570.3 |
High | No | 1330 | OG0004547 | Get ORF Coding potential... Type: noncoding Potential: -1.176 Folding energies... MFEI: -29.880 AMFE: -0.617 GC content %: 48.421 | |
| Tdicoccoides_TRIDC6AG008570.4 TRIDC6AG008570.4 |
High | No | 1581 | OG0002275 | Get ORF Coding potential... Type: noncoding Potential: -1.198 Folding energies... MFEI: -27.647 AMFE: -0.593 GC content %: 46.616 | |
| Tdicoccoides_TRIDC6AG008570.5 TRIDC6AG008570.5 |
High | No | 830 | OG0004547 | Get ORF Coding potential... Type: noncoding Potential: -1.243 Folding energies... MFEI: -29.072 AMFE: -0.557 GC content %: 52.169 | |
| Tdicoccoides_TRIDC6AG008570.6 TRIDC6AG008570.6 |
High | No | 1902 | OG0002275 | Get ORF Coding potential... Type: noncoding Potential: -1.319 Folding energies... MFEI: -27.387 AMFE: -0.628 GC content %: 43.638 | |
| Tdicoccoides_TRIDC6AG008570.7 TRIDC6AG008570.7 |
High | No | 2394 | OG0002275 | Get ORF Coding potential... Type: noncoding Potential: -1.226 Folding energies... MFEI: -26.353 AMFE: -0.621 GC content %: 42.439 | |
| Tdicoccoides_TRIDC6AG008570.8 TRIDC6AG008570.8 |
High | No | 1182 | OG0004547 | Get ORF Coding potential... Type: noncoding Potential: -1.399 Folding energies... MFEI: -29.382 AMFE: -0.606 GC content %: 48.477 | |
| Tdicoccoides_TRIDC6AG008570.9 TRIDC6AG008570.9 |
High | No | 1382 | OG0004547 | Get ORF Coding potential... Type: noncoding Potential: -1.184 Folding energies... MFEI: -28.191 AMFE: -0.609 GC content %: 46.310 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
