Tdicoccoides TRIDC6AG019040
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC6AG019040 [ TRIDC6AG019040] |
6A | 113785831 | 113797903 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC6AG019040.10 TRIDC6AG019040.10 |
Low | No | 1229 | OG0364334 | Get ORF Coding potential... Type: coding Potential: 0.238 Folding energies... MFEI: -24.573 AMFE: -0.634 GC content %: 38.731 | |
| Tdicoccoides_TRIDC6AG019040.11 TRIDC6AG019040.11 |
High | No | 1199 | OG0062506 | Get ORF Coding potential... Type: noncoding Potential: -0.783 Folding energies... MFEI: -24.704 AMFE: -0.645 GC content %: 38.282 | |
| Tdicoccoides_TRIDC6AG019040.12 TRIDC6AG019040.12 |
Low | No | 737 | OG0016608 | Get ORF Coding potential... Type: coding Potential: 0.170 Folding energies... MFEI: -24.668 AMFE: -0.598 GC content %: 41.248 | |
| Tdicoccoides_TRIDC6AG019040.2 TRIDC6AG019040.2 |
Low | No | 798 | OG0364335 | Get ORF Coding potential... Type: noncoding Potential: -0.436 Folding energies... MFEI: -32.744 AMFE: -0.688 GC content %: 47.619 | |
| Tdicoccoides_TRIDC6AG019040.5 TRIDC6AG019040.5 |
High | No | 1672 | OG0364336 | Get ORF Coding potential... Type: noncoding Potential: -0.128 Folding energies... MFEI: -24.773 AMFE: -0.651 GC content %: 38.038 | |
| Tdicoccoides_TRIDC6AG019040.6 TRIDC6AG019040.6 |
Low | No | 1427 | OG0364337 | Get ORF Coding potential... Type: coding Potential: 0.402 Folding energies... MFEI: -25.936 AMFE: -0.645 GC content %: 40.224 | |
| Tdicoccoides_TRIDC6AG019040.7 TRIDC6AG019040.7 |
Low | Yes | 1938 | OG0062506 | Get ORF Coding potential... Type: noncoding Potential: -0.626 Folding energies... MFEI: -26.280 AMFE: -0.700 GC content %: 37.564 | |
| Tdicoccoides_TRIDC6AG019040.8 TRIDC6AG019040.8 |
Low | Yes | 1466 | OG0364338 | Get ORF Coding potential... Type: coding Potential: 0.253 Folding energies... MFEI: -27.196 AMFE: -0.689 GC content %: 39.495 | |
| Tdicoccoides_TRIDC6AG019040.9 TRIDC6AG019040.9 |
Low | Yes | 1484 | OG0364339 | Get ORF Coding potential... Type: coding Potential: 0.269 Folding energies... MFEI: -26.981 AMFE: -0.692 GC content %: 39.016 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC6AG019040.8 | Rfam | 14.6 | MIR1122 | 2.4e-8 |
| Tdicoccoides_TRIDC6AG019040.9 | Rfam | 14.6 | MIR1122 | 2.4e-8 |
| Tdicoccoides_TRIDC6AG019040.7 | RepBase (RepeatMasker) | 2014-01-31 | DNA | |
| Tdicoccoides_TRIDC6AG019040.8 | RepBase (RepeatMasker) | 2014-01-31 | DNA | |
| Tdicoccoides_TRIDC6AG019040.2 | SwissProt | 2021-04-01 | Q96GN5 | 2.72e-8 |
| Tdicoccoides_TRIDC6AG019040.9 | RepBase (RepeatMasker) | 2014-01-31 | DNA | |
| Tdicoccoides_TRIDC6AG019040.7 | Rfam | 14.6 | MIR1122 | 3.2e-8 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
