Tdicoccoides TRIDC6AG021210
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC6AG021210 [ TRIDC6AG021210] |
6A | 137080558 | 137084176 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC6AG021210.1 TRIDC6AG021210.1 |
High | No | 857 | OG0000967 | Get ORF Coding potential... Type: noncoding Potential: -1.148 Folding energies... MFEI: -26.511 AMFE: -0.606 GC content %: 43.757 | |
| Tdicoccoides_TRIDC6AG021210.10 TRIDC6AG021210.10 |
High | No | 1155 | OG0000967 | Get ORF Coding potential... Type: noncoding Potential: -1.197 Folding energies... MFEI: -28.277 AMFE: -0.648 GC content %: 43.636 | |
| Tdicoccoides_TRIDC6AG021210.11 TRIDC6AG021210.11 |
High | No | 882 | OG0000967 | Get ORF Coding potential... Type: noncoding Potential: -1.205 Folding energies... MFEI: -23.186 AMFE: -0.506 GC content %: 45.805 | |
| Tdicoccoides_TRIDC6AG021210.12 TRIDC6AG021210.12 |
High | No | 1415 | OG0000967 | Get ORF Coding potential... Type: noncoding Potential: -1.176 Folding energies... MFEI: -27.039 AMFE: -0.554 GC content %: 48.763 | |
| Tdicoccoides_TRIDC6AG021210.13 TRIDC6AG021210.13 |
High | No | 1201 | OG0000967 | Get ORF Coding potential... Type: noncoding Potential: -1.203 Folding energies... MFEI: -26.278 AMFE: -0.639 GC content %: 41.132 | |
| Tdicoccoides_TRIDC6AG021210.14 TRIDC6AG021210.14 |
High | No | 1085 | OG0000967 | Get ORF Coding potential... Type: noncoding Potential: -1.118 Folding energies... MFEI: -25.631 AMFE: -0.642 GC content %: 39.908 | |
| Tdicoccoides_TRIDC6AG021210.15 TRIDC6AG021210.15 |
High | No | 1054 | OG0000967 | Get ORF Coding potential... Type: noncoding Potential: -1.161 Folding energies... MFEI: -25.351 AMFE: -0.635 GC content %: 39.943 | |
| Tdicoccoides_TRIDC6AG021210.2 TRIDC6AG021210.2 |
High | No | 1228 | OG0000967 | Get ORF Coding potential... Type: noncoding Potential: -1.206 Folding energies... MFEI: -26.621 AMFE: -0.655 GC content %: 40.635 | |
| Tdicoccoides_TRIDC6AG021210.3 TRIDC6AG021210.3 |
High | No | 1254 | OG0000967 | Get ORF Coding potential... Type: noncoding Potential: -1.171 Folding energies... MFEI: -30.606 AMFE: -0.595 GC content %: 51.435 | |
| Tdicoccoides_TRIDC6AG021210.4 TRIDC6AG021210.4 |
High | No | 1625 | OG0000967 | Get ORF Coding potential... Type: noncoding Potential: -1.241 Folding energies... MFEI: -29.440 AMFE: -0.622 GC content %: 47.323 | |
| Tdicoccoides_TRIDC6AG021210.5 TRIDC6AG021210.5 |
High | No | 1140 | OG0000967 | Get ORF Coding potential... Type: noncoding Potential: -1.195 Folding energies... MFEI: -26.781 AMFE: -0.657 GC content %: 40.789 | |
| Tdicoccoides_TRIDC6AG021210.6 TRIDC6AG021210.6 |
High | No | 769 | OG0000967 | Get ORF Coding potential... Type: noncoding Potential: -1.140 Folding energies... MFEI: -26.918 AMFE: -0.607 GC content %: 44.343 | |
| Tdicoccoides_TRIDC6AG021210.7 TRIDC6AG021210.7 |
High | No | 1963 | OG0000967 | Get ORF Coding potential... Type: noncoding Potential: -1.260 Folding energies... MFEI: -25.262 AMFE: -0.609 GC content %: 41.467 | |
| Tdicoccoides_TRIDC6AG021210.8 TRIDC6AG021210.8 |
High | No | 1180 | OG0000967 | Get ORF Coding potential... Type: noncoding Potential: -1.200 Folding energies... MFEI: -28.153 AMFE: -0.648 GC content %: 43.475 | |
| Tdicoccoides_TRIDC6AG021210.9 TRIDC6AG021210.9 |
High | No | 1322 | OG0000967 | Get ORF Coding potential... Type: noncoding Potential: -1.173 Folding energies... MFEI: -25.998 AMFE: -0.618 GC content %: 42.057 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
