Tdicoccoides TRIDC6AG021970
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC6AG021970 [ TRIDC6AG021970] |
6A | 145016919 | 145021311 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC6AG021970.1 TRIDC6AG021970.1 |
Low | No | 2292 | OG0000221 | Get ORF Coding potential... Type: noncoding Potential: -1.129 Folding energies... MFEI: -28.669 AMFE: -0.678 GC content %: 42.277 | |
| Tdicoccoides_TRIDC6AG021970.12 TRIDC6AG021970.12 |
High | No | 1718 | OG0000221 | Get ORF Coding potential... Type: noncoding Potential: -1.206 Folding energies... MFEI: -27.136 AMFE: -0.668 GC content %: 40.629 | |
| Tdicoccoides_TRIDC6AG021970.14 TRIDC6AG021970.14 |
High | No | 2320 | OG0000221 | Get ORF Coding potential... Type: noncoding Potential: -1.127 Folding energies... MFEI: -27.125 AMFE: -0.696 GC content %: 38.966 | |
| Tdicoccoides_TRIDC6AG021970.17 TRIDC6AG021970.17 |
Low | No | 1343 | OG0000221 | Get ORF Coding potential... Type: noncoding Potential: -1.106 Folding energies... MFEI: -30.558 AMFE: -0.644 GC content %: 47.431 | |
| Tdicoccoides_TRIDC6AG021970.18 TRIDC6AG021970.18 |
Low | No | 1647 | OG0000221 | Get ORF Coding potential... Type: noncoding Potential: -1.139 Folding energies... MFEI: -29.411 AMFE: -0.650 GC content %: 45.234 | |
| Tdicoccoides_TRIDC6AG021970.20 TRIDC6AG021970.20 |
Low | No | 3607 | OG0000221 | Get ORF Coding potential... Type: noncoding Potential: -1.163 Folding energies... MFEI: -27.264 AMFE: -0.693 GC content %: 39.368 | |
| Tdicoccoides_TRIDC6AG021970.21 TRIDC6AG021970.21 |
Low | No | 2115 | OG0000221 | Get ORF Coding potential... Type: noncoding Potential: -1.118 Folding energies... MFEI: -28.993 AMFE: -0.675 GC content %: 42.979 | |
| Tdicoccoides_TRIDC6AG021970.22 TRIDC6AG021970.22 |
Low | No | 1647 | OG0000221 | Get ORF Coding potential... Type: noncoding Potential: -1.139 Folding energies... MFEI: -29.526 AMFE: -0.655 GC content %: 45.112 | |
| Tdicoccoides_TRIDC6AG021970.23 TRIDC6AG021970.23 |
Low | No | 3820 | OG0000221 | Get ORF Coding potential... Type: noncoding Potential: -1.166 Folding energies... MFEI: -27.406 AMFE: -0.700 GC content %: 39.162 | |
| Tdicoccoides_TRIDC6AG021970.24 TRIDC6AG021970.24 |
Low | No | 2462 | OG0000221 | Get ORF Coding potential... Type: noncoding Potential: -1.190 Folding energies... MFEI: -28.664 AMFE: -0.687 GC content %: 41.714 | |
| Tdicoccoides_TRIDC6AG021970.25 TRIDC6AG021970.25 |
Low | No | 1384 | OG0000221 | Get ORF Coding potential... Type: noncoding Potential: -1.111 Folding energies... MFEI: -31.062 AMFE: -0.660 GC content %: 47.038 | |
| Tdicoccoides_TRIDC6AG021970.26 TRIDC6AG021970.26 |
High | No | 2034 | OG0000221 | Get ORF Coding potential... Type: noncoding Potential: -1.215 Folding energies... MFEI: -28.343 AMFE: -0.709 GC content %: 39.971 | |
| Tdicoccoides_TRIDC6AG021970.29 TRIDC6AG021970.29 |
Low | No | 3337 | OG0000221 | Get ORF Coding potential... Type: noncoding Potential: -1.157 Folding energies... MFEI: -27.708 AMFE: -0.698 GC content %: 39.706 | |
| Tdicoccoides_TRIDC6AG021970.3 TRIDC6AG021970.3 |
Low | No | 1676 | OG0000221 | Get ORF Coding potential... Type: noncoding Potential: -1.142 Folding energies... MFEI: -29.821 AMFE: -0.661 GC content %: 45.107 | |
| Tdicoccoides_TRIDC6AG021970.30 TRIDC6AG021970.30 |
Low | No | 1934 | OG0000221 | Get ORF Coding potential... Type: noncoding Potential: -1.162 Folding energies... MFEI: -28.904 AMFE: -0.666 GC content %: 43.382 | |
| Tdicoccoides_TRIDC6AG021970.31 TRIDC6AG021970.31 |
Low | No | 2839 | OG0000221 | Get ORF Coding potential... Type: noncoding Potential: -1.145 Folding energies... MFEI: -28.344 AMFE: -0.699 GC content %: 40.578 | |
| Tdicoccoides_TRIDC6AG021970.32 TRIDC6AG021970.32 |
Low | No | 2897 | OG0000221 | Get ORF Coding potential... Type: noncoding Potential: -1.156 Folding energies... MFEI: -27.594 AMFE: -0.682 GC content %: 40.456 | |
| Tdicoccoides_TRIDC6AG021970.33 TRIDC6AG021970.33 |
Low | No | 2910 | OG0000221 | Get ORF Coding potential... Type: noncoding Potential: -1.157 Folding energies... MFEI: -27.660 AMFE: -0.683 GC content %: 40.481 | |
| Tdicoccoides_TRIDC6AG021970.34 TRIDC6AG021970.34 |
Low | No | 3135 | OG0000221 | Get ORF Coding potential... Type: noncoding Potential: -1.164 Folding energies... MFEI: -27.321 AMFE: -0.685 GC content %: 39.904 | |
| Tdicoccoides_TRIDC6AG021970.36 TRIDC6AG021970.36 |
High | No | 1268 | OG0000221 | Get ORF Coding potential... Type: noncoding Potential: -1.160 Folding energies... MFEI: -27.461 AMFE: -0.659 GC content %: 41.640 | |
| Tdicoccoides_TRIDC6AG021970.39 TRIDC6AG021970.39 |
Low | No | 910 | OG0000221 | Get ORF Coding potential... Type: noncoding Potential: -1.125 Folding energies... MFEI: -27.978 AMFE: -0.619 GC content %: 45.165 | |
| Tdicoccoides_TRIDC6AG021970.40 TRIDC6AG021970.40 |
Low | No | 904 | OG0000221 | Get ORF Coding potential... Type: noncoding Potential: -1.159 Folding energies... MFEI: -28.042 AMFE: -0.626 GC content %: 44.801 | |
| Tdicoccoides_TRIDC6AG021970.41 TRIDC6AG021970.41 |
High | No | 1830 | OG0000221 | Get ORF Coding potential... Type: noncoding Potential: -1.219 Folding energies... MFEI: -25.869 AMFE: -0.681 GC content %: 37.978 | |
| Tdicoccoides_TRIDC6AG021970.42 TRIDC6AG021970.42 |
High | No | 1567 | OG0000221 | Get ORF Coding potential... Type: noncoding Potential: -1.105 Folding energies... MFEI: -24.888 AMFE: -0.667 GC content %: 37.332 | |
| Tdicoccoides_TRIDC6AG021970.43 TRIDC6AG021970.43 |
High | No | 2639 | OG0000221 | Get ORF Coding potential... Type: noncoding Potential: -1.139 Folding energies... MFEI: -25.877 AMFE: -0.714 GC content %: 36.226 | |
| Tdicoccoides_TRIDC6AG021970.44 TRIDC6AG021970.44 |
High | No | 1922 | OG0000221 | Get ORF Coding potential... Type: noncoding Potential: -1.107 Folding energies... MFEI: -25.552 AMFE: -0.697 GC content %: 36.681 | |
| Tdicoccoides_TRIDC6AG021970.45 TRIDC6AG021970.45 |
High | No | 2130 | OG0000221 | Get ORF Coding potential... Type: noncoding Potential: -1.118 Folding energies... MFEI: -25.230 AMFE: -0.694 GC content %: 36.338 | |
| Tdicoccoides_TRIDC6AG021970.5 TRIDC6AG021970.5 |
Low | No | 2031 | OG0000221 | Get ORF Coding potential... Type: noncoding Potential: -1.168 Folding energies... MFEI: -28.080 AMFE: -0.653 GC content %: 42.984 | |
| Tdicoccoides_TRIDC6AG021970.9 TRIDC6AG021970.9 |
Low | No | 2182 | OG0000221 | Get ORF Coding potential... Type: noncoding Potential: -1.176 Folding energies... MFEI: -28.501 AMFE: -0.670 GC content %: 42.530 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC6AG021970.30 | SwissProt | 2021-04-01 | Q6K972 | 1.37e-4 |
| Tdicoccoides_TRIDC6AG021970.23 | SwissProt | 2021-04-01 | Q6K972 | 4.14e-4 |
| Tdicoccoides_TRIDC6AG021970.17 | SwissProt | 2021-04-01 | Q6K972 | 7.8e-5 |
| Tdicoccoides_TRIDC6AG021970.40 | SwissProt | 2021-04-01 | Q6EU14 | 1.08e-4 |
| Tdicoccoides_TRIDC6AG021970.31 | SwissProt | 2021-04-01 | Q6K972 | 2.28e-4 |
| Tdicoccoides_TRIDC6AG021970.24 | SwissProt | 2021-04-01 | Q6K972 | 1.9e-4 |
| Tdicoccoides_TRIDC6AG021970.18 | SwissProt | 2021-04-01 | Q6K972 | 1.09e-4 |
| Tdicoccoides_TRIDC6AG021970.5 | SwissProt | 2021-04-01 | Q6K972 | 2.01e-4 |
| Tdicoccoides_TRIDC6AG021970.32 | SwissProt | 2021-04-01 | Q6K972 | 2.97e-4 |
| Tdicoccoides_TRIDC6AG021970.25 | SwissProt | 2021-04-01 | Q6K972 | 8.19e-5 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
