Tdicoccoides TRIDC6AG023100
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC6AG023100 [ TRIDC6AG023100] |
6A | 157292217 | 157295908 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC6AG023100.1 TRIDC6AG023100.1 |
High | No | 676 | OG0062516 | Get ORF Coding potential... Type: noncoding Potential: -1.249 Folding energies... MFEI: -31.524 AMFE: -0.629 GC content %: 50.148 | |
| Tdicoccoides_TRIDC6AG023100.10 TRIDC6AG023100.10 |
Low | No | 1551 | OG0001506 | Get ORF Coding potential... Type: noncoding Potential: -1.066 Folding energies... MFEI: -28.420 AMFE: -0.676 GC content %: 42.037 | |
| Tdicoccoides_TRIDC6AG023100.11 TRIDC6AG023100.11 |
Low | No | 1640 | OG0001506 | Get ORF Coding potential... Type: noncoding Potential: -1.063 Folding energies... MFEI: -28.841 AMFE: -0.681 GC content %: 42.378 | |
| Tdicoccoides_TRIDC6AG023100.12 TRIDC6AG023100.12 |
Low | No | 1684 | OG0001506 | Get ORF Coding potential... Type: noncoding Potential: -0.933 Folding energies... MFEI: -28.694 AMFE: -0.679 GC content %: 42.280 | |
| Tdicoccoides_TRIDC6AG023100.13 TRIDC6AG023100.13 |
Low | No | 1667 | OG0001506 | Get ORF Coding potential... Type: noncoding Potential: -1.205 Folding energies... MFEI: -28.650 AMFE: -0.684 GC content %: 41.872 | |
| Tdicoccoides_TRIDC6AG023100.14 TRIDC6AG023100.14 |
Low | No | 1432 | OG0001506 | Get ORF Coding potential... Type: noncoding Potential: -0.906 Folding energies... MFEI: -27.556 AMFE: -0.665 GC content %: 41.411 | |
| Tdicoccoides_TRIDC6AG023100.2 TRIDC6AG023100.2 |
High | No | 570 | OG0062516 | Get ORF Coding potential... Type: noncoding Potential: -1.375 Folding energies... MFEI: -32.667 AMFE: -0.608 GC content %: 53.684 | |
| Tdicoccoides_TRIDC6AG023100.3 TRIDC6AG023100.3 |
Low | No | 2086 | OG0001506 | Get ORF Coding potential... Type: noncoding Potential: -1.096 Folding energies... MFEI: -30.302 AMFE: -0.679 GC content %: 44.631 | |
| Tdicoccoides_TRIDC6AG023100.4 TRIDC6AG023100.4 |
Low | No | 1948 | OG0001506 | Get ORF Coding potential... Type: noncoding Potential: -0.953 Folding energies... MFEI: -29.209 AMFE: -0.676 GC content %: 43.224 | |
| Tdicoccoides_TRIDC6AG023100.5 TRIDC6AG023100.5 |
Low | No | 2086 | OG0001506 | Get ORF Coding potential... Type: noncoding Potential: -0.962 Folding energies... MFEI: -27.780 AMFE: -0.684 GC content %: 40.604 | |
| Tdicoccoides_TRIDC6AG023100.6 TRIDC6AG023100.6 |
Low | No | 1631 | OG0001506 | Get ORF Coding potential... Type: noncoding Potential: -1.073 Folding energies... MFEI: -27.584 AMFE: -0.675 GC content %: 40.895 | |
| Tdicoccoides_TRIDC6AG023100.7 TRIDC6AG023100.7 |
Low | No | 1638 | OG0001506 | Get ORF Coding potential... Type: noncoding Potential: -0.928 Folding energies... MFEI: -28.828 AMFE: -0.680 GC content %: 42.369 | |
| Tdicoccoides_TRIDC6AG023100.8 TRIDC6AG023100.8 |
Low | No | 1769 | OG0001506 | Get ORF Coding potential... Type: noncoding Potential: -1.213 Folding energies... MFEI: -28.700 AMFE: -0.679 GC content %: 42.284 | |
| Tdicoccoides_TRIDC6AG023100.9 TRIDC6AG023100.9 |
Low | No | 1822 | OG0001506 | Get ORF Coding potential... Type: noncoding Potential: -1.217 Folding energies... MFEI: -28.908 AMFE: -0.685 GC content %: 42.206 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC6AG023100.10 | SwissProt | 2021-04-01 | Q9LN20 | 2.22e-8 |
| Tdicoccoides_TRIDC6AG023100.9 | SwissProt | 2021-04-01 | Q9LN20 | 2.74e-8 |
| Tdicoccoides_TRIDC6AG023100.4 | SwissProt | 2021-04-01 | Q9LN20 | 3.84e-8 |
| Tdicoccoides_TRIDC6AG023100.11 | SwissProt | 2021-04-01 | Q9LN20 | 2.6e-8 |
| Tdicoccoides_TRIDC6AG023100.5 | SwissProt | 2021-04-01 | Q9LN20 | 4.21e-8 |
| Tdicoccoides_TRIDC6AG023100.12 | SwissProt | 2021-04-01 | Q9LN20 | 3.13e-8 |
| Tdicoccoides_TRIDC6AG023100.6 | SwissProt | 2021-04-01 | Q9LN20 | 2.4e-8 |
| Tdicoccoides_TRIDC6AG023100.13 | SwissProt | 2021-04-01 | Q9LN20 | 2.41e-8 |
| Tdicoccoides_TRIDC6AG023100.7 | SwissProt | 2021-04-01 | Q9LN20 | 3.01e-8 |
| Tdicoccoides_TRIDC6AG023100.14 | SwissProt | 2021-04-01 | Q9LN20 | 2.45e-8 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
