Tdicoccoides TRIDC6AG034350
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC6AG034350 [ TRIDC6AG034350] |
6A | 416105948 | 416111718 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC6AG034350.1 TRIDC6AG034350.1 |
Low | No | 938 | OG0006679 | Get ORF Coding potential... Type: noncoding Potential: -0.331 Folding energies... MFEI: -25.448 AMFE: -0.566 GC content %: 44.989 | |
| Tdicoccoides_TRIDC6AG034350.10 TRIDC6AG034350.10 |
High | No | 588 | OG0364525 | Get ORF Coding potential... Type: noncoding Potential: -1.274 Folding energies... MFEI: -20.289 AMFE: -0.533 GC content %: 38.095 | |
| Tdicoccoides_TRIDC6AG034350.11 TRIDC6AG034350.11 |
Low | No | 848 | OG0006679 | Get ORF Coding potential... Type: noncoding Potential: -0.186 Folding energies... MFEI: -25.778 AMFE: -0.612 GC content %: 42.099 | |
| Tdicoccoides_TRIDC6AG034350.2 TRIDC6AG034350.2 |
Low | No | 913 | OG0006679 | Get ORF Coding potential... Type: noncoding Potential: -0.260 Folding energies... MFEI: -25.411 AMFE: -0.564 GC content %: 45.016 | |
| Tdicoccoides_TRIDC6AG034350.3 TRIDC6AG034350.3 |
Low | No | 939 | OG0006679 | Get ORF Coding potential... Type: noncoding Potential: -0.230 Folding energies... MFEI: -25.133 AMFE: -0.566 GC content %: 44.409 | |
| Tdicoccoides_TRIDC6AG034350.4 TRIDC6AG034350.4 |
Low | No | 832 | OG0006679 | Get ORF Coding potential... Type: noncoding Potential: -0.185 Folding energies... MFEI: -26.526 AMFE: -0.578 GC content %: 45.913 | |
| Tdicoccoides_TRIDC6AG034350.5 TRIDC6AG034350.5 |
Low | No | 919 | OG0006679 | Get ORF Coding potential... Type: noncoding Potential: -0.303 Folding energies... MFEI: -26.170 AMFE: -0.582 GC content %: 44.940 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC6AG034350.1 | SwissProt | 2021-04-01 | Q9USZ5 | 1.8e-14 |
| Tdicoccoides_TRIDC6AG034350.11 | SwissProt | 2021-04-01 | Q9USZ5 | 6.73e-16 |
| Tdicoccoides_TRIDC6AG034350.2 | SwissProt | 2021-04-01 | A7RVK7 | 2.0e-15 |
| Tdicoccoides_TRIDC6AG034350.3 | SwissProt | 2021-04-01 | Q9USZ5 | 2.38e-15 |
| Tdicoccoides_TRIDC6AG034350.4 | SwissProt | 2021-04-01 | Q9USZ5 | 1.83e-16 |
| Tdicoccoides_TRIDC6AG034350.5 | SwissProt | 2021-04-01 | F1SRI0 | 2.18e-15 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
