GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Tdicoccoides_TRIDC6AG035620 [ TRIDC6AG035620]	6A	438136087	438139656	v1	Triticum dicoccoides (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Tdicoccoides_TRIDC6AG035620.1 TRIDC6AG035620.1	High	No	831	OG0364548		Get ORF Coding potential... Type: noncoding Potential: -0.597 Folding energies... MFEI: -33.718 AMFE: -0.659 GC content %: 51.143
Tdicoccoides_TRIDC6AG035620.3 TRIDC6AG035620.3	High	No	999	OG0002951		Get ORF Coding potential... Type: noncoding Potential: -0.646 Folding energies... MFEI: -34.985 AMFE: -0.668 GC content %: 52.352

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).