Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Tdicoccoides_TRIDC6AG036960 [ TRIDC6AG036960] |
6A | 451250379 | 451252806 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Tdicoccoides_TRIDC6AG036960.3 TRIDC6AG036960.3 |
Low | No | 1240 | OG0009490 | Get ORF Coding potential... Type: noncoding Potential: -1.286 Folding energies... MFEI: -29.556 AMFE: -0.651 GC content %: 45.403 | |
Tdicoccoides_TRIDC6AG036960.4 TRIDC6AG036960.4 |
Low | No | 651 | OG0009490 | Get ORF Coding potential... Type: noncoding Potential: -0.067 Folding energies... MFEI: -25.223 AMFE: -0.608 GC content %: 41.475 | |
Tdicoccoides_TRIDC6AG036960.5 TRIDC6AG036960.5 |
Low | No | 1915 | OG0009490 | Get ORF Coding potential... Type: noncoding Potential: -0.116 Folding energies... MFEI: -27.123 AMFE: -0.683 GC content %: 39.687 | |
Tdicoccoides_TRIDC6AG036960.6 TRIDC6AG036960.6 |
Low | No | 2007 | OG0009490 | Get ORF Coding potential... Type: noncoding Potential: -0.279 Folding energies... MFEI: -27.275 AMFE: -0.689 GC content %: 39.611 | |
Tdicoccoides_TRIDC6AG036960.7 TRIDC6AG036960.7 |
Low | No | 463 | OG0009490 | Get ORF Coding potential... Type: noncoding Potential: -0.087 Folding energies... MFEI: -26.177 AMFE: -0.618 GC content %: 42.333 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Tdicoccoides_TRIDC6AG036960.6 | SwissProt | 2021-04-01 | Q6H628 | 8.12e-20 |
Tdicoccoides_TRIDC6AG036960.7 | SwissProt | 2021-04-01 | Q6H628 | 2.12e-14 |
Tdicoccoides_TRIDC6AG036960.3 | SwissProt | 2021-04-01 | Q6H628 | 7.74e-5 |
Tdicoccoides_TRIDC6AG036960.4 | SwissProt | 2021-04-01 | Q6H628 | 3.05e-25 |
Tdicoccoides_TRIDC6AG036960.5 | SwissProt | 2021-04-01 | Q6H628 | 8.7e-28 |