Tdicoccoides TRIDC6AG047780
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC6AG047780 [ TRIDC6AG047780] |
6A | 553801336 | 553804881 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC6AG047780.1 TRIDC6AG047780.1 |
High | No | 847 | OG0001121 | Get ORF Coding potential... Type: noncoding Potential: -0.923 Folding energies... MFEI: -26.364 AMFE: -0.730 GC content %: 36.128 | |
| Tdicoccoides_TRIDC6AG047780.10 TRIDC6AG047780.10 |
High | No | 993 | OG0001121 | Get ORF Coding potential... Type: noncoding Potential: -1.037 Folding energies... MFEI: -28.369 AMFE: -0.642 GC content %: 44.209 | |
| Tdicoccoides_TRIDC6AG047780.11 TRIDC6AG047780.11 |
High | No | 1109 | OG0001121 | Get ORF Coding potential... Type: noncoding Potential: -1.409 Folding energies... MFEI: -25.879 AMFE: -0.667 GC content %: 38.774 | |
| Tdicoccoides_TRIDC6AG047780.12 TRIDC6AG047780.12 |
High | No | 2480 | OG0001121 | Get ORF Coding potential... Type: noncoding Potential: -1.362 Folding energies... MFEI: -27.036 AMFE: -0.706 GC content %: 38.306 | |
| Tdicoccoides_TRIDC6AG047780.13 TRIDC6AG047780.13 |
High | No | 1225 | OG0001121 | Get ORF Coding potential... Type: noncoding Potential: -1.412 Folding energies... MFEI: -25.224 AMFE: -0.651 GC content %: 38.776 | |
| Tdicoccoides_TRIDC6AG047780.2 TRIDC6AG047780.2 |
High | No | 884 | OG0001121 | Get ORF Coding potential... Type: noncoding Potential: -0.944 Folding energies... MFEI: -28.971 AMFE: -0.660 GC content %: 43.891 | |
| Tdicoccoides_TRIDC6AG047780.3 TRIDC6AG047780.3 |
High | No | 1491 | OG0001121 | Get ORF Coding potential... Type: noncoding Potential: -1.007 Folding energies... MFEI: -25.942 AMFE: -0.677 GC content %: 38.296 | |
| Tdicoccoides_TRIDC6AG047780.4 TRIDC6AG047780.4 |
High | No | 1575 | OG0001121 | Get ORF Coding potential... Type: noncoding Potential: -1.087 Folding energies... MFEI: -26.800 AMFE: -0.691 GC content %: 38.794 | |
| Tdicoccoides_TRIDC6AG047780.5 TRIDC6AG047780.5 |
High | No | 842 | OG0001121 | Get ORF Coding potential... Type: noncoding Potential: -0.965 Folding energies... MFEI: -28.551 AMFE: -0.631 GC content %: 45.249 | |
| Tdicoccoides_TRIDC6AG047780.6 TRIDC6AG047780.6 |
High | No | 2830 | OG0001121 | Get ORF Coding potential... Type: noncoding Potential: -1.131 Folding energies... MFEI: -28.004 AMFE: -0.729 GC content %: 38.410 | |
| Tdicoccoides_TRIDC6AG047780.7 TRIDC6AG047780.7 |
High | No | 942 | OG0001121 | Get ORF Coding potential... Type: noncoding Potential: -1.031 Folding energies... MFEI: -30.265 AMFE: -0.685 GC content %: 44.161 | |
| Tdicoccoides_TRIDC6AG047780.8 TRIDC6AG047780.8 |
High | No | 2694 | OG0001121 | Get ORF Coding potential... Type: noncoding Potential: -1.058 Folding energies... MFEI: -27.405 AMFE: -0.720 GC content %: 38.085 | |
| Tdicoccoides_TRIDC6AG047780.9 TRIDC6AG047780.9 |
High | No | 712 | OG0001121 | Get ORF Coding potential... Type: noncoding Potential: -0.871 Folding energies... MFEI: -26.742 AMFE: -0.588 GC content %: 45.506 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
