Tdicoccoides TRIDC6AG048190
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC6AG048190 [ TRIDC6AG048190] |
6A | 555470289 | 555476714 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC6AG048190.1 TRIDC6AG048190.1 |
Low | No | 3155 | OG0000108 | Get ORF Coding potential... Type: noncoding Potential: -1.093 Folding energies... MFEI: -27.471 AMFE: -0.659 GC content %: 41.680 | |
| Tdicoccoides_TRIDC6AG048190.10 TRIDC6AG048190.10 |
Low | No | 2554 | OG0006682 | Get ORF Coding potential... Type: noncoding Potential: -0.983 Folding energies... MFEI: -28.136 AMFE: -0.660 GC content %: 42.639 | |
| Tdicoccoides_TRIDC6AG048190.11 TRIDC6AG048190.11 |
Low | No | 2224 | OG0000108 | Get ORF Coding potential... Type: noncoding Potential: -0.974 Folding energies... MFEI: -28.624 AMFE: -0.656 GC content %: 43.615 | |
| Tdicoccoides_TRIDC6AG048190.12 TRIDC6AG048190.12 |
Low | No | 2958 | OG0000108 | Get ORF Coding potential... Type: noncoding Potential: -1.088 Folding energies... MFEI: -27.715 AMFE: -0.668 GC content %: 41.515 | |
| Tdicoccoides_TRIDC6AG048190.13 TRIDC6AG048190.13 |
Low | No | 2097 | OG0000108 | Get ORF Coding potential... Type: noncoding Potential: -1.084 Folding energies... MFEI: -29.103 AMFE: -0.665 GC content %: 43.777 | |
| Tdicoccoides_TRIDC6AG048190.14 TRIDC6AG048190.14 |
Low | No | 2804 | OG0000108 | Get ORF Coding potential... Type: noncoding Potential: -1.083 Folding energies... MFEI: -27.850 AMFE: -0.669 GC content %: 41.655 | |
| Tdicoccoides_TRIDC6AG048190.15 TRIDC6AG048190.15 |
Low | No | 2609 | OG0000108 | Get ORF Coding potential... Type: noncoding Potential: -1.105 Folding energies... MFEI: -27.700 AMFE: -0.665 GC content %: 41.663 | |
| Tdicoccoides_TRIDC6AG048190.16 TRIDC6AG048190.16 |
Low | No | 2548 | OG0015410 | Get ORF Coding potential... Type: noncoding Potential: -0.983 Folding energies... MFEI: -28.022 AMFE: -0.657 GC content %: 42.661 | |
| Tdicoccoides_TRIDC6AG048190.17 TRIDC6AG048190.17 |
Low | No | 3554 | OG0000108 | Get ORF Coding potential... Type: noncoding Potential: -1.102 Folding energies... MFEI: -27.361 AMFE: -0.670 GC content %: 40.827 | |
| Tdicoccoides_TRIDC6AG048190.18 TRIDC6AG048190.18 |
Low | No | 2780 | OG0006682 | Get ORF Coding potential... Type: noncoding Potential: -0.989 Folding energies... MFEI: -27.835 AMFE: -0.664 GC content %: 41.906 | |
| Tdicoccoides_TRIDC6AG048190.19 TRIDC6AG048190.19 |
Low | No | 3510 | OG0000108 | Get ORF Coding potential... Type: noncoding Potential: -1.101 Folding energies... MFEI: -27.288 AMFE: -0.666 GC content %: 40.997 | |
| Tdicoccoides_TRIDC6AG048190.2 TRIDC6AG048190.2 |
Low | No | 2259 | OG0000108 | Get ORF Coding potential... Type: noncoding Potential: -0.975 Folding energies... MFEI: -28.278 AMFE: -0.651 GC content %: 43.471 | |
| Tdicoccoides_TRIDC6AG048190.20 TRIDC6AG048190.20 |
Low | No | 2657 | OG0000108 | Get ORF Coding potential... Type: noncoding Potential: -1.106 Folding energies... MFEI: -28.099 AMFE: -0.664 GC content %: 42.303 | |
| Tdicoccoides_TRIDC6AG048190.21 TRIDC6AG048190.21 |
Low | No | 2507 | OG0006682 | Get ORF Coding potential... Type: noncoding Potential: -0.982 Folding energies... MFEI: -28.137 AMFE: -0.666 GC content %: 42.242 | |
| Tdicoccoides_TRIDC6AG048190.22 TRIDC6AG048190.22 |
Low | No | 2547 | OG0015410 | Get ORF Coding potential... Type: noncoding Potential: -0.983 Folding energies... MFEI: -28.194 AMFE: -0.661 GC content %: 42.678 | |
| Tdicoccoides_TRIDC6AG048190.23 TRIDC6AG048190.23 |
Low | No | 2708 | OG0015410 | Get ORF Coding potential... Type: noncoding Potential: -0.987 Folding energies... MFEI: -27.773 AMFE: -0.660 GC content %: 42.061 | |
| Tdicoccoides_TRIDC6AG048190.24 TRIDC6AG048190.24 |
Low | No | 2922 | OG0000108 | Get ORF Coding potential... Type: noncoding Potential: -1.087 Folding energies... MFEI: -27.666 AMFE: -0.668 GC content %: 41.444 | |
| Tdicoccoides_TRIDC6AG048190.25 TRIDC6AG048190.25 |
Low | No | 2068 | OG0006682 | Get ORF Coding potential... Type: noncoding Potential: -0.968 Folding energies... MFEI: -28.264 AMFE: -0.660 GC content %: 42.795 | |
| Tdicoccoides_TRIDC6AG048190.3 TRIDC6AG048190.3 |
Low | No | 2198 | OG0364757 | Get ORF Coding potential... Type: noncoding Potential: -0.973 Folding energies... MFEI: -28.808 AMFE: -0.648 GC content %: 44.449 | |
| Tdicoccoides_TRIDC6AG048190.33 TRIDC6AG048190.33 |
Low | No | 2494 | OG0006682 | Get ORF Coding potential... Type: noncoding Potential: -0.982 Folding energies... MFEI: -28.059 AMFE: -0.659 GC content %: 42.582 | |
| Tdicoccoides_TRIDC6AG048190.34 TRIDC6AG048190.34 |
Low | No | 3078 | OG0000108 | Get ORF Coding potential... Type: noncoding Potential: -1.091 Folding energies... MFEI: -27.313 AMFE: -0.667 GC content %: 40.968 | |
| Tdicoccoides_TRIDC6AG048190.35 TRIDC6AG048190.35 |
Low | No | 2459 | OG0015410 | Get ORF Coding potential... Type: noncoding Potential: -0.981 Folding energies... MFEI: -27.727 AMFE: -0.657 GC content %: 42.172 | |
| Tdicoccoides_TRIDC6AG048190.36 TRIDC6AG048190.36 |
Low | No | 2841 | OG0000108 | Get ORF Coding potential... Type: noncoding Potential: -1.084 Folding energies... MFEI: -27.522 AMFE: -0.676 GC content %: 40.725 | |
| Tdicoccoides_TRIDC6AG048190.37 TRIDC6AG048190.37 |
Low | No | 2484 | OG0000108 | Get ORF Coding potential... Type: noncoding Potential: -1.071 Folding energies... MFEI: -27.738 AMFE: -0.671 GC content %: 41.345 | |
| Tdicoccoides_TRIDC6AG048190.38 TRIDC6AG048190.38 |
Low | No | 3230 | OG0000108 | Get ORF Coding potential... Type: noncoding Potential: -1.095 Folding energies... MFEI: -27.074 AMFE: -0.668 GC content %: 40.557 | |
| Tdicoccoides_TRIDC6AG048190.39 TRIDC6AG048190.39 |
Low | No | 2635 | OG0000108 | Get ORF Coding potential... Type: noncoding Potential: -1.106 Folding energies... MFEI: -28.042 AMFE: -0.665 GC content %: 42.163 | |
| Tdicoccoides_TRIDC6AG048190.4 TRIDC6AG048190.4 |
Low | No | 2401 | OG0000108 | Get ORF Coding potential... Type: noncoding Potential: -0.979 Folding energies... MFEI: -28.309 AMFE: -0.652 GC content %: 43.399 | |
| Tdicoccoides_TRIDC6AG048190.40 TRIDC6AG048190.40 |
Low | No | 1987 | OG0364758 | Get ORF Coding potential... Type: noncoding Potential: -0.965 Folding energies... MFEI: -28.395 AMFE: -0.665 GC content %: 42.728 | |
| Tdicoccoides_TRIDC6AG048190.41 TRIDC6AG048190.41 |
Low | No | 2370 | OG0000108 | Get ORF Coding potential... Type: noncoding Potential: -1.066 Folding energies... MFEI: -27.329 AMFE: -0.660 GC content %: 41.435 | |
| Tdicoccoides_TRIDC6AG048190.42 TRIDC6AG048190.42 |
Low | No | 1788 | OG0364759 | Get ORF Coding potential... Type: noncoding Potential: -0.955 Folding energies... MFEI: -27.092 AMFE: -0.674 GC content %: 40.213 | |
| Tdicoccoides_TRIDC6AG048190.43 TRIDC6AG048190.43 |
Low | No | 2136 | OG0000108 | Get ORF Coding potential... Type: noncoding Potential: -0.970 Folding energies... MFEI: -27.271 AMFE: -0.674 GC content %: 40.449 | |
| Tdicoccoides_TRIDC6AG048190.44 TRIDC6AG048190.44 |
Low | No | 2188 | OG0000108 | Get ORF Coding potential... Type: noncoding Potential: -1.058 Folding energies... MFEI: -27.043 AMFE: -0.682 GC content %: 39.625 | |
| Tdicoccoides_TRIDC6AG048190.5 TRIDC6AG048190.5 |
Low | No | 2643 | OG0000108 | Get ORF Coding potential... Type: noncoding Potential: -1.077 Folding energies... MFEI: -27.893 AMFE: -0.661 GC content %: 42.225 | |
| Tdicoccoides_TRIDC6AG048190.6 TRIDC6AG048190.6 |
Low | No | 3418 | OG0000108 | Get ORF Coding potential... Type: noncoding Potential: -1.099 Folding energies... MFEI: -27.335 AMFE: -0.664 GC content %: 41.164 | |
| Tdicoccoides_TRIDC6AG048190.7 TRIDC6AG048190.7 |
Low | No | 2395 | OG0006682 | Get ORF Coding potential... Type: noncoding Potential: -0.979 Folding energies... MFEI: -28.079 AMFE: -0.650 GC content %: 43.173 | |
| Tdicoccoides_TRIDC6AG048190.8 TRIDC6AG048190.8 |
Low | No | 2791 | OG0000108 | Get ORF Coding potential... Type: noncoding Potential: -1.083 Folding energies... MFEI: -27.675 AMFE: -0.659 GC content %: 41.992 | |
| Tdicoccoides_TRIDC6AG048190.9 TRIDC6AG048190.9 |
Low | No | 2604 | OG0000108 | Get ORF Coding potential... Type: noncoding Potential: -1.076 Folding energies... MFEI: -28.145 AMFE: -0.666 GC content %: 42.281 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC6AG048190.8 | SwissProt | 2021-04-01 | Q8L6Y1 | 1.17e-6 |
| Tdicoccoides_TRIDC6AG048190.40 | RepBase (RepeatMasker) | 2014-01-31 | DNA/MULE-MuDR | |
| Tdicoccoides_TRIDC6AG048190.12 | SwissProt | 2021-04-01 | Q8L6Y1 | 1.26e-6 |
| Tdicoccoides_TRIDC6AG048190.33 | SwissProt | 2021-04-01 | Q8L6Y1 | 1.34e-6 |
| Tdicoccoides_TRIDC6AG048190.21 | RepBase (RepeatMasker) | 2014-01-31 | DNA/MULE-MuDR | |
| Tdicoccoides_TRIDC6AG048190.22 | SwissProt | 2021-04-01 | Q8L6Y1 | 1.38e-6 |
| Tdicoccoides_TRIDC6AG048190.43 | SwissProt | 2021-04-01 | Q8L6Y1 | 1.08e-6 |
| Tdicoccoides_TRIDC6AG048190.14 | RepBase (RepeatMasker) | 2014-01-31 | DNA/MULE-MuDR | |
| Tdicoccoides_TRIDC6AG048190.8 | RepBase (RepeatMasker) | 2014-01-31 | DNA/MULE-MuDR | |
| Tdicoccoides_TRIDC6AG048190.18 | SwissProt | 2021-04-01 | Q8L6Y1 | 1.55e-6 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
