Tdicoccoides TRIDC6AG048920
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC6AG048920 [ TRIDC6AG048920] |
6A | 559501605 | 559510566 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC6AG048920.1 TRIDC6AG048920.1 |
Low | No | 1717 | OG0002798 | Get ORF Coding potential... Type: noncoding Potential: -0.027 Folding energies... MFEI: -29.330 AMFE: -0.651 GC content %: 45.020 | |
| Tdicoccoides_TRIDC6AG048920.15 TRIDC6AG048920.15 |
Low | No | 1698 | OG0002798 | Get ORF Coding potential... Type: noncoding Potential: -0.089 Folding energies... MFEI: -27.774 AMFE: -0.661 GC content %: 41.991 | |
| Tdicoccoides_TRIDC6AG048920.17 TRIDC6AG048920.17 |
Low | No | 1418 | OG0002798 | Get ORF Coding potential... Type: noncoding Potential: -0.165 Folding energies... MFEI: -27.856 AMFE: -0.655 GC content %: 42.525 | |
| Tdicoccoides_TRIDC6AG048920.18 TRIDC6AG048920.18 |
Low | No | 466 | OG0002798 | Get ORF Coding potential... Type: noncoding Potential: -0.225 Folding energies... MFEI: -28.455 AMFE: -0.592 GC content %: 48.069 | |
| Tdicoccoides_TRIDC6AG048920.20 TRIDC6AG048920.20 |
High | No | 206 | OG0364772 | Get ORF Coding potential... Type: noncoding Potential: -1.102 Folding energies... MFEI: -24.903 AMFE: -0.503 GC content %: 49.515 | |
| Tdicoccoides_TRIDC6AG048920.21 TRIDC6AG048920.21 |
High | No | 2736 | OG0023277 | Get ORF Coding potential... Type: noncoding Potential: -0.981 Folding energies... MFEI: -26.082 AMFE: -0.680 GC content %: 38.341 | |
| Tdicoccoides_TRIDC6AG048920.22 TRIDC6AG048920.22 |
High | No | 2223 | OG0023277 | Get ORF Coding potential... Type: noncoding Potential: -1.099 Folding energies... MFEI: -26.734 AMFE: -0.697 GC content %: 38.372 | |
| Tdicoccoides_TRIDC6AG048920.23 TRIDC6AG048920.23 |
High | No | 1135 | OG0023277 | Get ORF Coding potential... Type: noncoding Potential: -0.848 Folding energies... MFEI: -25.639 AMFE: -0.637 GC content %: 40.264 | |
| Tdicoccoides_TRIDC6AG048920.3 TRIDC6AG048920.3 |
Low | No | 1600 | OG0002798 | Get ORF Coding potential... Type: noncoding Potential: -0.157 Folding energies... MFEI: -29.413 AMFE: -0.646 GC content %: 45.500 | |
| Tdicoccoides_TRIDC6AG048920.5 TRIDC6AG048920.5 |
Low | No | 1040 | OG0002798 | Get ORF Coding potential... Type: noncoding Potential: -0.016 Folding energies... MFEI: -29.481 AMFE: -0.602 GC content %: 48.942 | |
| Tdicoccoides_TRIDC6AG048920.6 TRIDC6AG048920.6 |
Low | No | 1696 | OG0002798 | Get ORF Coding potential... Type: noncoding Potential: -0.065 Folding energies... MFEI: -28.768 AMFE: -0.645 GC content %: 44.575 | |
| Tdicoccoides_TRIDC6AG048920.7 TRIDC6AG048920.7 |
Low | No | 947 | OG0002798 | Get ORF Coding potential... Type: noncoding Potential: -0.134 Folding energies... MFEI: -31.246 AMFE: -0.615 GC content %: 50.792 | |
| Tdicoccoides_TRIDC6AG048920.9 TRIDC6AG048920.9 |
Low | No | 644 | OG0002798 | Get ORF Coding potential... Type: noncoding Potential: -0.268 Folding energies... MFEI: -32.780 AMFE: -0.614 GC content %: 53.416 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC6AG048920.6 | SwissProt | 2021-04-01 | Q8W250 | 4.72e-32 |
| Tdicoccoides_TRIDC6AG048920.15 | SwissProt | 2021-04-01 | Q8W250 | 3.64e-32 |
| Tdicoccoides_TRIDC6AG048920.7 | SwissProt | 2021-04-01 | Q8W250 | 4.75e-41 |
| Tdicoccoides_TRIDC6AG048920.17 | SwissProt | 2021-04-01 | Q8W250 | 1.71e-39 |
| Tdicoccoides_TRIDC6AG048920.9 | SwissProt | 2021-04-01 | Q8W250 | 2.18e-42 |
| Tdicoccoides_TRIDC6AG048920.18 | SwissProt | 2021-04-01 | Q8W250 | 2.7e-43 |
| Tdicoccoides_TRIDC6AG048920.3 | SwissProt | 2021-04-01 | Q8W250 | 4.65e-39 |
| Tdicoccoides_TRIDC6AG048920.5 | SwissProt | 2021-04-01 | Q8W250 | 2.49e-32 |
| Tdicoccoides_TRIDC6AG048920.1 | SwissProt | 2021-04-01 | Q8W250 | 8.15e-39 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
