Tdicoccoides TRIDC6AG051320
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC6AG051320 [ TRIDC6AG051320] |
6A | 575387600 | 575392286 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC6AG051320.10 TRIDC6AG051320.10 |
Low | No | 1240 | OG0001263 | Get ORF Coding potential... Type: noncoding Potential: -0.052 Folding energies... MFEI: -26.661 AMFE: -0.594 GC content %: 44.919 | |
| Tdicoccoides_TRIDC6AG051320.13 TRIDC6AG051320.13 |
Low | No | 2907 | OG0001263 | Get ORF Coding potential... Type: noncoding Potential: -0.116 Folding energies... MFEI: -24.850 AMFE: -0.623 GC content %: 39.869 | |
| Tdicoccoides_TRIDC6AG051320.15 TRIDC6AG051320.15 |
Low | No | 1633 | OG0001263 | Get ORF Coding potential... Type: noncoding Potential: -0.165 Folding energies... MFEI: -26.081 AMFE: -0.665 GC content %: 39.192 | |
| Tdicoccoides_TRIDC6AG051320.16 TRIDC6AG051320.16 |
Low | No | 1999 | OG0001263 | Get ORF Coding potential... Type: noncoding Potential: -0.238 Folding energies... MFEI: -23.187 AMFE: -0.596 GC content %: 38.919 | |
| Tdicoccoides_TRIDC6AG051320.17 TRIDC6AG051320.17 |
Low | No | 2062 | OG0001263 | Get ORF Coding potential... Type: noncoding Potential: -0.179 Folding energies... MFEI: -23.647 AMFE: -0.606 GC content %: 38.991 | |
| Tdicoccoides_TRIDC6AG051320.18 TRIDC6AG051320.18 |
Low | No | 1037 | OG0001263 | Get ORF Coding potential... Type: noncoding Potential: -0.024 Folding energies... MFEI: -27.011 AMFE: -0.661 GC content %: 40.887 | |
| Tdicoccoides_TRIDC6AG051320.19 TRIDC6AG051320.19 |
Low | No | 1450 | OG0001263 | Get ORF Coding potential... Type: noncoding Potential: -0.469 Folding energies... MFEI: -22.324 AMFE: -0.586 GC content %: 38.069 | |
| Tdicoccoides_TRIDC6AG051320.2 TRIDC6AG051320.2 |
Low | No | 2810 | OG0001263 | Get ORF Coding potential... Type: noncoding Potential: -0.115 Folding energies... MFEI: -23.886 AMFE: -0.590 GC content %: 40.463 | |
| Tdicoccoides_TRIDC6AG051320.3 TRIDC6AG051320.3 |
Low | No | 1963 | OG0001263 | Get ORF Coding potential... Type: noncoding Potential: -0.172 Folding energies... MFEI: -23.291 AMFE: -0.558 GC content %: 41.773 | |
| Tdicoccoides_TRIDC6AG051320.4 TRIDC6AG051320.4 |
Low | No | 951 | OG0001263 | Get ORF Coding potential... Type: noncoding Potential: -0.005 Folding energies... MFEI: -26.330 AMFE: -0.561 GC content %: 46.898 | |
| Tdicoccoides_TRIDC6AG051320.6 TRIDC6AG051320.6 |
Low | No | 2054 | OG0001263 | Get ORF Coding potential... Type: noncoding Potential: -0.139 Folding energies... MFEI: -25.798 AMFE: -0.620 GC content %: 41.626 | |
| Tdicoccoides_TRIDC6AG051320.7 TRIDC6AG051320.7 |
Low | No | 987 | OG0001263 | Get ORF Coding potential... Type: noncoding Potential: -0.027 Folding energies... MFEI: -27.214 AMFE: -0.580 GC content %: 46.910 | |
| Tdicoccoides_TRIDC6AG051320.8 TRIDC6AG051320.8 |
Low | No | 2614 | OG0001263 | Get ORF Coding potential... Type: noncoding Potential: -0.106 Folding energies... MFEI: -23.439 AMFE: -0.583 GC content %: 40.207 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC6AG051320.7 | SwissProt | 2021-04-01 | Q6AT33 | 7.92e-10 |
| Tdicoccoides_TRIDC6AG051320.19 | SwissProt | 2021-04-01 | A2WTQ5 | 5.55e-11 |
| Tdicoccoides_TRIDC6AG051320.13 | SwissProt | 2021-04-01 | Q6AT33 | 1.08e-8 |
| Tdicoccoides_TRIDC6AG051320.17 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy; LTR/Pao | |
| Tdicoccoides_TRIDC6AG051320.8 | SwissProt | 2021-04-01 | Q6AT33 | 9.51e-9 |
| Tdicoccoides_TRIDC6AG051320.2 | SwissProt | 2021-04-01 | Q6AT33 | 1.04e-8 |
| Tdicoccoides_TRIDC6AG051320.15 | SwissProt | 2021-04-01 | Q6AT33 | 2.24e-10 |
| Tdicoccoides_TRIDC6AG051320.18 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy; LTR/Pao | |
| Tdicoccoides_TRIDC6AG051320.10 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy; LTR/Pao | |
| Tdicoccoides_TRIDC6AG051320.3 | SwissProt | 2021-04-01 | Q6AT33 | 1.89e-10 |
... further results
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
