Tdicoccoides TRIDC6AG054890
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC6AG054890 [ TRIDC6AG054890] |
6A | 594840285 | 594845171 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC6AG054890.2 TRIDC6AG054890.2 |
Low | No | 1492 | OG0001486 | Get ORF Coding potential... Type: noncoding Potential: -0.442 Folding energies... MFEI: -28.143 AMFE: -0.672 GC content %: 41.890 | |
| Tdicoccoides_TRIDC6AG054890.3 TRIDC6AG054890.3 |
Low | No | 2368 | OG0001486 | Get ORF Coding potential... Type: noncoding Potential: -0.362 Folding energies... MFEI: -31.419 AMFE: -0.667 GC content %: 47.086 | |
| Tdicoccoides_TRIDC6AG054890.4 TRIDC6AG054890.4 |
Low | No | 1860 | OG0001486 | Get ORF Coding potential... Type: noncoding Potential: -0.294 Folding energies... MFEI: -30.274 AMFE: -0.689 GC content %: 43.925 | |
| Tdicoccoides_TRIDC6AG054890.6 TRIDC6AG054890.6 |
Low | No | 2277 | OG0001486 | Get ORF Coding potential... Type: noncoding Potential: -0.509 Folding energies... MFEI: -31.603 AMFE: -0.666 GC content %: 47.431 | |
| Tdicoccoides_TRIDC6AG054890.8 TRIDC6AG054890.8 |
High | No | 1649 | OG0001486 | Get ORF Coding potential... Type: noncoding Potential: -1.040 Folding energies... MFEI: -31.534 AMFE: -0.645 GC content %: 48.878 | |
| Tdicoccoides_TRIDC6AG054890.9 TRIDC6AG054890.9 |
High | No | 873 | OG0001486 | Get ORF Coding potential... Type: noncoding Potential: -0.963 Folding energies... MFEI: -35.452 AMFE: -0.629 GC content %: 56.357 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC6AG054890.2 | SwissProt | 2021-04-01 | Q8VZZ4 | 5.08e-12 |
| Tdicoccoides_TRIDC6AG054890.3 | SwissProt | 2021-04-01 | Q8VZZ4 | 1.27e-11 |
| Tdicoccoides_TRIDC6AG054890.4 | SwissProt | 2021-04-01 | Q9LK64 | 5.3e-20 |
| Tdicoccoides_TRIDC6AG054890.6 | SwissProt | 2021-04-01 | Q8VZZ4 | 1.19e-11 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
