Tdicoccoides TRIDC6BG005110
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC6BG005110 [ TRIDC6BG005110] |
6B | 25463614 | 25470715 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC6BG005110.12 TRIDC6BG005110.12 |
Low | No | 1031 | OG0000183 | Get ORF Coding potential... Type: noncoding Potential: -1.056 Folding energies... MFEI: -26.925 AMFE: -0.671 GC content %: 40.155 | |
| Tdicoccoides_TRIDC6BG005110.19 TRIDC6BG005110.19 |
High | No | 394 | OG0365027 | Get ORF Coding potential... Type: noncoding Potential: -1.187 Folding energies... MFEI: -39.391 AMFE: -0.546 GC content %: 72.081 | |
| Tdicoccoides_TRIDC6BG005110.3 TRIDC6BG005110.3 |
Low | No | 1160 | OG0000183 | Get ORF Coding potential... Type: noncoding Potential: -1.004 Folding energies... MFEI: -29.888 AMFE: -0.710 GC content %: 42.069 | |
| Tdicoccoides_TRIDC6BG005110.4 TRIDC6BG005110.4 |
Low | No | 1758 | OG0000183 | Get ORF Coding potential... Type: noncoding Potential: -1.070 Folding energies... MFEI: -27.736 AMFE: -0.703 GC content %: 39.477 | |
| Tdicoccoides_TRIDC6BG005110.5 TRIDC6BG005110.5 |
Low | No | 1061 | OG0000183 | Get ORF Coding potential... Type: noncoding Potential: -1.059 Folding energies... MFEI: -29.463 AMFE: -0.689 GC content %: 42.790 | |
| Tdicoccoides_TRIDC6BG005110.9 TRIDC6BG005110.9 |
Low | No | 1506 | OG0000183 | Get ORF Coding potential... Type: noncoding Potential: -1.090 Folding energies... MFEI: -26.693 AMFE: -0.690 GC content %: 38.712 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC6BG005110.9 | RepBase (RepeatMasker) | 2014-01-31 | SINE/tRNA | |
| Tdicoccoides_TRIDC6BG005110.12 | RepBase (RepeatMasker) | 2014-01-31 | SINE/tRNA | |
| Tdicoccoides_TRIDC6BG005110.3 | RepBase (RepeatMasker) | 2014-01-31 | SINE/tRNA | |
| Tdicoccoides_TRIDC6BG005110.4 | RepBase (RepeatMasker) | 2014-01-31 | SINE/tRNA | |
| Tdicoccoides_TRIDC6BG005110.5 | RepBase (RepeatMasker) | 2014-01-31 | SINE/tRNA |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
