Tdicoccoides TRIDC6BG007640
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC6BG007640 [ TRIDC6BG007640] |
6B | 38771158 | 38778359 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC6BG007640.1 TRIDC6BG007640.1 |
High | No | 1546 | OG0009499 | Get ORF Coding potential... Type: noncoding Potential: -0.198 Folding energies... MFEI: -29.955 AMFE: -0.666 GC content %: 44.955 | |
| Tdicoccoides_TRIDC6BG007640.3 TRIDC6BG007640.3 |
High | No | 849 | OG0009499 | Get ORF Coding potential... Type: noncoding Potential: -0.567 Folding energies... MFEI: -25.748 AMFE: -0.599 GC content %: 42.992 | |
| Tdicoccoides_TRIDC6BG007640.5 TRIDC6BG007640.5 |
High | No | 1282 | OG0009499 | Get ORF Coding potential... Type: noncoding Potential: -0.200 Folding energies... MFEI: -30.445 AMFE: -0.637 GC content %: 47.816 | |
| Tdicoccoides_TRIDC6BG007640.7 TRIDC6BG007640.7 |
High | No | 840 | OG0009499 | Get ORF Coding potential... Type: noncoding Potential: -0.615 Folding energies... MFEI: -26.381 AMFE: -0.604 GC content %: 43.690 | |
| Tdicoccoides_TRIDC6BG007640.8 TRIDC6BG007640.8 |
High | No | 960 | OG0009499 | Get ORF Coding potential... Type: noncoding Potential: -0.589 Folding energies... MFEI: -26.281 AMFE: -0.615 GC content %: 42.708 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
