Tdicoccoides TRIDC6BG014530
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC6BG014530 [ TRIDC6BG014530] |
6B | 84236714 | 84243770 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC6BG014530.1 TRIDC6BG014530.1 |
High | No | 3208 | OG0000545 | Get ORF Coding potential... Type: noncoding Potential: -1.070 Folding energies... MFEI: -27.865 AMFE: -0.686 GC content %: 40.617 | |
| Tdicoccoides_TRIDC6BG014530.10 TRIDC6BG014530.10 |
High | No | 2651 | OG0000545 | Get ORF Coding potential... Type: noncoding Potential: -1.228 Folding energies... MFEI: -27.533 AMFE: -0.678 GC content %: 40.626 | |
| Tdicoccoides_TRIDC6BG014530.11 TRIDC6BG014530.11 |
High | No | 2405 | OG0000545 | Get ORF Coding potential... Type: noncoding Potential: -1.238 Folding energies... MFEI: -27.576 AMFE: -0.661 GC content %: 41.746 | |
| Tdicoccoides_TRIDC6BG014530.12 TRIDC6BG014530.12 |
High | No | 1561 | OG0000545 | Get ORF Coding potential... Type: noncoding Potential: -0.815 Folding energies... MFEI: -30.506 AMFE: -0.666 GC content %: 45.804 | |
| Tdicoccoides_TRIDC6BG014530.13 TRIDC6BG014530.13 |
High | No | 2490 | OG0000545 | Get ORF Coding potential... Type: noncoding Potential: -0.801 Folding energies... MFEI: -28.349 AMFE: -0.665 GC content %: 42.610 | |
| Tdicoccoides_TRIDC6BG014530.14 TRIDC6BG014530.14 |
High | No | 2486 | OG0000545 | Get ORF Coding potential... Type: noncoding Potential: -0.801 Folding energies... MFEI: -28.359 AMFE: -0.665 GC content %: 42.639 | |
| Tdicoccoides_TRIDC6BG014530.15 TRIDC6BG014530.15 |
High | No | 307 | OG0365134 | Get ORF Coding potential... Type: noncoding Potential: -1.262 Folding energies... MFEI: -18.502 AMFE: -0.477 GC content %: 38.762 | |
| Tdicoccoides_TRIDC6BG014530.16 TRIDC6BG014530.16 |
High | No | 1247 | OG0000545 | Get ORF Coding potential... Type: noncoding Potential: -1.429 Folding energies... MFEI: -22.080 AMFE: -0.602 GC content %: 36.648 | |
| Tdicoccoides_TRIDC6BG014530.17 TRIDC6BG014530.17 |
High | No | 2599 | OG0000545 | Get ORF Coding potential... Type: noncoding Potential: -1.227 Folding energies... MFEI: -26.780 AMFE: -0.669 GC content %: 40.054 | |
| Tdicoccoides_TRIDC6BG014530.18 TRIDC6BG014530.18 |
High | No | 2433 | OG0000545 | Get ORF Coding potential... Type: noncoding Potential: -1.222 Folding energies... MFEI: -27.390 AMFE: -0.674 GC content %: 40.608 | |
| Tdicoccoides_TRIDC6BG014530.19 TRIDC6BG014530.19 |
High | No | 2011 | OG0000545 | Get ORF Coding potential... Type: noncoding Potential: -1.272 Folding energies... MFEI: -27.270 AMFE: -0.659 GC content %: 41.372 | |
| Tdicoccoides_TRIDC6BG014530.2 TRIDC6BG014530.2 |
High | No | 2726 | OG0000545 | Get ORF Coding potential... Type: noncoding Potential: -0.940 Folding energies... MFEI: -27.960 AMFE: -0.672 GC content %: 41.636 | |
| Tdicoccoides_TRIDC6BG014530.20 TRIDC6BG014530.20 |
High | No | 2140 | OG0000545 | Get ORF Coding potential... Type: noncoding Potential: -0.791 Folding energies... MFEI: -27.734 AMFE: -0.662 GC content %: 41.916 | |
| Tdicoccoides_TRIDC6BG014530.21 TRIDC6BG014530.21 |
High | No | 2209 | OG0000545 | Get ORF Coding potential... Type: noncoding Potential: -0.795 Folding energies... MFEI: -27.922 AMFE: -0.663 GC content %: 42.146 | |
| Tdicoccoides_TRIDC6BG014530.3 TRIDC6BG014530.3 |
High | No | 2635 | OG0000545 | Get ORF Coding potential... Type: noncoding Potential: -0.969 Folding energies... MFEI: -27.822 AMFE: -0.671 GC content %: 41.442 | |
| Tdicoccoides_TRIDC6BG014530.4 TRIDC6BG014530.4 |
High | No | 2836 | OG0000545 | Get ORF Coding potential... Type: noncoding Potential: -1.061 Folding energies... MFEI: -27.652 AMFE: -0.675 GC content %: 40.973 | |
| Tdicoccoides_TRIDC6BG014530.5 TRIDC6BG014530.5 |
High | No | 2410 | OG0000545 | Get ORF Coding potential... Type: noncoding Potential: -0.799 Folding energies... MFEI: -28.328 AMFE: -0.668 GC content %: 42.407 | |
| Tdicoccoides_TRIDC6BG014530.6 TRIDC6BG014530.6 |
High | No | 2413 | OG0000545 | Get ORF Coding potential... Type: noncoding Potential: -0.799 Folding energies... MFEI: -28.293 AMFE: -0.667 GC content %: 42.437 | |
| Tdicoccoides_TRIDC6BG014530.7 TRIDC6BG014530.7 |
High | No | 2746 | OG0000545 | Get ORF Coding potential... Type: noncoding Potential: -0.775 Folding energies... MFEI: -28.296 AMFE: -0.674 GC content %: 41.988 | |
| Tdicoccoides_TRIDC6BG014530.8 TRIDC6BG014530.8 |
High | No | 2792 | OG0000545 | Get ORF Coding potential... Type: noncoding Potential: -0.968 Folding energies... MFEI: -27.998 AMFE: -0.679 GC content %: 41.261 | |
| Tdicoccoides_TRIDC6BG014530.9 TRIDC6BG014530.9 |
High | No | 2884 | OG0000545 | Get ORF Coding potential... Type: noncoding Potential: -1.062 Folding energies... MFEI: -27.191 AMFE: -0.686 GC content %: 39.632 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
