Tdicoccoides TRIDC6BG015440
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC6BG015440 [ TRIDC6BG015440] |
6B | 94304815 | 94307855 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC6BG015440.1 TRIDC6BG015440.1 |
High | No | 606 | OG0015416 | Get ORF Coding potential... Type: noncoding Potential: -1.054 Folding energies... MFEI: -25.413 AMFE: -0.611 GC content %: 41.584 | |
| Tdicoccoides_TRIDC6BG015440.2 TRIDC6BG015440.2 |
High | No | 757 | OG0015416 | Get ORF Coding potential... Type: noncoding Potential: -0.805 Folding energies... MFEI: -29.524 AMFE: -0.573 GC content %: 51.519 | |
| Tdicoccoides_TRIDC6BG015440.3 TRIDC6BG015440.3 |
High | No | 547 | OG0015416 | Get ORF Coding potential... Type: noncoding Potential: -0.715 Folding energies... MFEI: -24.753 AMFE: -0.531 GC content %: 46.618 | |
| Tdicoccoides_TRIDC6BG015440.4 TRIDC6BG015440.4 |
High | No | 277 | OG0365143 | Get ORF Coding potential... Type: noncoding Potential: -0.887 Folding energies... MFEI: -22.708 AMFE: -0.484 GC content %: 46.931 | |
| Tdicoccoides_TRIDC6BG015440.6 TRIDC6BG015440.6 |
High | No | 216 | OG0365144 | Get ORF Coding potential... Type: noncoding Potential: -0.889 Folding energies... MFEI: -24.630 AMFE: -0.517 GC content %: 47.685 | |
| Tdicoccoides_TRIDC6BG015440.7 TRIDC6BG015440.7 |
High | No | 334 | OG0015416 | Get ORF Coding potential... Type: noncoding Potential: -0.810 Folding energies... MFEI: -24.641 AMFE: -0.405 GC content %: 60.778 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
