Tdicoccoides TRIDC6BG015920
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC6BG015920 [ TRIDC6BG015920] |
6B | 96893454 | 96899355 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC6BG015920.1 TRIDC6BG015920.1 |
High | No | 2480 | OG0000101 | Get ORF Coding potential... Type: noncoding Potential: -0.916 Folding energies... MFEI: -32.891 AMFE: -0.670 GC content %: 49.113 | |
| Tdicoccoides_TRIDC6BG015920.10 TRIDC6BG015920.10 |
High | No | 2032 | OG0000101 | Get ORF Coding potential... Type: noncoding Potential: -1.026 Folding energies... MFEI: -33.199 AMFE: -0.671 GC content %: 49.459 | |
| Tdicoccoides_TRIDC6BG015920.11 TRIDC6BG015920.11 |
High | No | 2128 | OG0000101 | Get ORF Coding potential... Type: noncoding Potential: -1.033 Folding energies... MFEI: -33.022 AMFE: -0.667 GC content %: 49.530 | |
| Tdicoccoides_TRIDC6BG015920.12 TRIDC6BG015920.12 |
High | No | 2260 | OG0000101 | Get ORF Coding potential... Type: noncoding Potential: -1.041 Folding energies... MFEI: -32.155 AMFE: -0.668 GC content %: 48.142 | |
| Tdicoccoides_TRIDC6BG015920.13 TRIDC6BG015920.13 |
High | No | 2529 | OG0000101 | Get ORF Coding potential... Type: noncoding Potential: -1.056 Folding energies... MFEI: -32.883 AMFE: -0.683 GC content %: 48.161 | |
| Tdicoccoides_TRIDC6BG015920.14 TRIDC6BG015920.14 |
High | No | 2528 | OG0000101 | Get ORF Coding potential... Type: noncoding Potential: -1.055 Folding energies... MFEI: -32.733 AMFE: -0.685 GC content %: 47.785 | |
| Tdicoccoides_TRIDC6BG015920.15 TRIDC6BG015920.15 |
High | No | 3118 | OG0000101 | Get ORF Coding potential... Type: noncoding Potential: -1.079 Folding energies... MFEI: -33.117 AMFE: -0.692 GC content %: 47.883 | |
| Tdicoccoides_TRIDC6BG015920.16 TRIDC6BG015920.16 |
High | No | 2276 | OG0000101 | Get ORF Coding potential... Type: noncoding Potential: -1.042 Folding energies... MFEI: -32.641 AMFE: -0.670 GC content %: 48.726 | |
| Tdicoccoides_TRIDC6BG015920.17 TRIDC6BG015920.17 |
High | No | 2249 | OG0000101 | Get ORF Coding potential... Type: noncoding Potential: -1.041 Folding energies... MFEI: -32.801 AMFE: -0.673 GC content %: 48.733 | |
| Tdicoccoides_TRIDC6BG015920.18 TRIDC6BG015920.18 |
High | No | 2780 | OG0000101 | Get ORF Coding potential... Type: noncoding Potential: -1.067 Folding energies... MFEI: -32.036 AMFE: -0.685 GC content %: 46.799 | |
| Tdicoccoides_TRIDC6BG015920.19 TRIDC6BG015920.19 |
High | No | 2250 | OG0000101 | Get ORF Coding potential... Type: noncoding Potential: -1.041 Folding energies... MFEI: -32.569 AMFE: -0.677 GC content %: 48.133 | |
| Tdicoccoides_TRIDC6BG015920.2 TRIDC6BG015920.2 |
High | No | 2645 | OG0000101 | Get ORF Coding potential... Type: noncoding Potential: -0.921 Folding energies... MFEI: -32.507 AMFE: -0.671 GC content %: 48.469 | |
| Tdicoccoides_TRIDC6BG015920.20 TRIDC6BG015920.20 |
High | No | 2120 | OG0000101 | Get ORF Coding potential... Type: noncoding Potential: -1.032 Folding energies... MFEI: -33.241 AMFE: -0.682 GC content %: 48.774 | |
| Tdicoccoides_TRIDC6BG015920.21 TRIDC6BG015920.21 |
High | No | 2386 | OG0000101 | Get ORF Coding potential... Type: noncoding Potential: -1.048 Folding energies... MFEI: -32.653 AMFE: -0.679 GC content %: 48.114 | |
| Tdicoccoides_TRIDC6BG015920.22 TRIDC6BG015920.22 |
High | No | 2568 | OG0000101 | Get ORF Coding potential... Type: noncoding Potential: -1.057 Folding energies... MFEI: -32.122 AMFE: -0.675 GC content %: 47.586 | |
| Tdicoccoides_TRIDC6BG015920.23 TRIDC6BG015920.23 |
High | No | 2349 | OG0000101 | Get ORF Coding potential... Type: noncoding Potential: -1.046 Folding energies... MFEI: -32.720 AMFE: -0.679 GC content %: 48.191 | |
| Tdicoccoides_TRIDC6BG015920.24 TRIDC6BG015920.24 |
High | No | 2474 | OG0000101 | Get ORF Coding potential... Type: noncoding Potential: -1.053 Folding energies... MFEI: -32.340 AMFE: -0.679 GC content %: 47.656 | |
| Tdicoccoides_TRIDC6BG015920.25 TRIDC6BG015920.25 |
High | No | 1710 | OG0000101 | Get ORF Coding potential... Type: noncoding Potential: -1.143 Folding energies... MFEI: -34.526 AMFE: -0.672 GC content %: 51.404 | |
| Tdicoccoides_TRIDC6BG015920.26 TRIDC6BG015920.26 |
High | No | 2202 | OG0000101 | Get ORF Coding potential... Type: noncoding Potential: -1.038 Folding energies... MFEI: -31.739 AMFE: -0.670 GC content %: 47.366 | |
| Tdicoccoides_TRIDC6BG015920.27 TRIDC6BG015920.27 |
High | No | 2153 | OG0000101 | Get ORF Coding potential... Type: noncoding Potential: -1.035 Folding energies... MFEI: -32.127 AMFE: -0.686 GC content %: 46.865 | |
| Tdicoccoides_TRIDC6BG015920.28 TRIDC6BG015920.28 |
High | No | 2180 | OG0000101 | Get ORF Coding potential... Type: noncoding Potential: -1.036 Folding energies... MFEI: -31.977 AMFE: -0.682 GC content %: 46.881 | |
| Tdicoccoides_TRIDC6BG015920.29 TRIDC6BG015920.29 |
High | No | 3013 | OG0000101 | Get ORF Coding potential... Type: noncoding Potential: -1.075 Folding energies... MFEI: -31.357 AMFE: -0.685 GC content %: 45.768 | |
| Tdicoccoides_TRIDC6BG015920.3 TRIDC6BG015920.3 |
High | No | 2490 | OG0000101 | Get ORF Coding potential... Type: noncoding Potential: -0.916 Folding energies... MFEI: -32.859 AMFE: -0.670 GC content %: 49.036 | |
| Tdicoccoides_TRIDC6BG015920.31 TRIDC6BG015920.31 |
High | No | 2154 | OG0000101 | Get ORF Coding potential... Type: noncoding Potential: -1.035 Folding energies... MFEI: -32.024 AMFE: -0.685 GC content %: 46.750 | |
| Tdicoccoides_TRIDC6BG015920.32 TRIDC6BG015920.32 |
High | No | 2256 | OG0000101 | Get ORF Coding potential... Type: noncoding Potential: -1.041 Folding energies... MFEI: -31.268 AMFE: -0.680 GC content %: 46.011 | |
| Tdicoccoides_TRIDC6BG015920.33 TRIDC6BG015920.33 |
High | No | 2313 | OG0000101 | Get ORF Coding potential... Type: noncoding Potential: -1.044 Folding energies... MFEI: -31.435 AMFE: -0.683 GC content %: 46.001 | |
| Tdicoccoides_TRIDC6BG015920.34 TRIDC6BG015920.34 |
High | No | 2340 | OG0000101 | Get ORF Coding potential... Type: noncoding Potential: -1.046 Folding energies... MFEI: -31.291 AMFE: -0.680 GC content %: 46.026 | |
| Tdicoccoides_TRIDC6BG015920.35 TRIDC6BG015920.35 |
High | No | 2334 | OG0000101 | Get ORF Coding potential... Type: noncoding Potential: -1.045 Folding energies... MFEI: -31.195 AMFE: -0.682 GC content %: 45.716 | |
| Tdicoccoides_TRIDC6BG015920.36 TRIDC6BG015920.36 |
High | No | 2317 | OG0000101 | Get ORF Coding potential... Type: noncoding Potential: -1.045 Folding energies... MFEI: -31.377 AMFE: -0.684 GC content %: 45.878 | |
| Tdicoccoides_TRIDC6BG015920.37 TRIDC6BG015920.37 |
High | No | 3033 | OG0000101 | Get ORF Coding potential... Type: noncoding Potential: -1.076 Folding energies... MFEI: -30.709 AMFE: -0.683 GC content %: 44.972 | |
| Tdicoccoides_TRIDC6BG015920.38 TRIDC6BG015920.38 |
High | No | 3099 | OG0000101 | Get ORF Coding potential... Type: noncoding Potential: -1.078 Folding energies... MFEI: -30.965 AMFE: -0.689 GC content %: 44.950 | |
| Tdicoccoides_TRIDC6BG015920.39 TRIDC6BG015920.39 |
High | No | 1892 | OG0000101 | Get ORF Coding potential... Type: noncoding Potential: -1.016 Folding energies... MFEI: -30.708 AMFE: -0.703 GC content %: 43.710 | |
| Tdicoccoides_TRIDC6BG015920.4 TRIDC6BG015920.4 |
High | No | 2641 | OG0000101 | Get ORF Coding potential... Type: noncoding Potential: -1.061 Folding energies... MFEI: -32.628 AMFE: -0.672 GC content %: 48.542 | |
| Tdicoccoides_TRIDC6BG015920.40 TRIDC6BG015920.40 |
High | No | 535 | OG0062618 | Get ORF Coding potential... Type: noncoding Potential: -1.326 Folding energies... MFEI: -25.421 AMFE: -0.648 GC content %: 39.252 | |
| Tdicoccoides_TRIDC6BG015920.41 TRIDC6BG015920.41 |
High | No | 586 | OG0062618 | Get ORF Coding potential... Type: noncoding Potential: -1.372 Folding energies... MFEI: -23.618 AMFE: -0.629 GC content %: 37.543 | |
| Tdicoccoides_TRIDC6BG015920.5 TRIDC6BG015920.5 |
High | No | 2457 | OG0000101 | Get ORF Coding potential... Type: noncoding Potential: -1.052 Folding energies... MFEI: -32.918 AMFE: -0.670 GC content %: 49.166 | |
| Tdicoccoides_TRIDC6BG015920.6 TRIDC6BG015920.6 |
High | No | 3332 | OG0000101 | Get ORF Coding potential... Type: noncoding Potential: -0.946 Folding energies... MFEI: -31.582 AMFE: -0.678 GC content %: 46.609 | |
| Tdicoccoides_TRIDC6BG015920.7 TRIDC6BG015920.7 |
High | No | 2550 | OG0000101 | Get ORF Coding potential... Type: noncoding Potential: -1.057 Folding energies... MFEI: -32.698 AMFE: -0.680 GC content %: 48.118 | |
| Tdicoccoides_TRIDC6BG015920.8 TRIDC6BG015920.8 |
High | No | 2515 | OG0000101 | Get ORF Coding potential... Type: noncoding Potential: -1.055 Folding energies... MFEI: -32.561 AMFE: -0.677 GC content %: 48.111 | |
| Tdicoccoides_TRIDC6BG015920.9 TRIDC6BG015920.9 |
High | No | 2035 | OG0000101 | Get ORF Coding potential... Type: noncoding Potential: -1.027 Folding energies... MFEI: -33.184 AMFE: -0.671 GC content %: 49.435 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
