Tdicoccoides TRIDC6BG020760
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC6BG020760 [ TRIDC6BG020760] |
6B | 146264287 | 146267323 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC6BG020760.1 TRIDC6BG020760.1 |
High | No | 933 | OG0001507 | Get ORF Coding potential... Type: noncoding Potential: -1.116 Folding energies... MFEI: -25.884 AMFE: -0.629 GC content %: 41.158 | |
| Tdicoccoides_TRIDC6BG020760.10 TRIDC6BG020760.10 |
High | No | 506 | OG0001507 | Get ORF Coding potential... Type: noncoding Potential: -1.269 Folding energies... MFEI: -28.696 AMFE: -0.623 GC content %: 46.047 | |
| Tdicoccoides_TRIDC6BG020760.11 TRIDC6BG020760.11 |
Low | No | 676 | OG0001507 | Get ORF Coding potential... Type: noncoding Potential: -0.930 Folding energies... MFEI: -31.302 AMFE: -0.637 GC content %: 49.112 | |
| Tdicoccoides_TRIDC6BG020760.12 TRIDC6BG020760.12 |
Low | No | 659 | OG0001507 | Get ORF Coding potential... Type: noncoding Potential: -1.218 Folding energies... MFEI: -29.894 AMFE: -0.621 GC content %: 48.103 | |
| Tdicoccoides_TRIDC6BG020760.13 TRIDC6BG020760.13 |
Low | No | 283 | OG0365194 | Get ORF Coding potential... Type: noncoding Potential: -0.879 Folding energies... MFEI: -34.806 AMFE: -0.516 GC content %: 67.491 | |
| Tdicoccoides_TRIDC6BG020760.2 TRIDC6BG020760.2 |
Low | No | 883 | OG0001507 | Get ORF Coding potential... Type: noncoding Potential: -0.964 Folding energies... MFEI: -28.584 AMFE: -0.639 GC content %: 44.734 | |
| Tdicoccoides_TRIDC6BG020760.3 TRIDC6BG020760.3 |
Low | No | 797 | OG0001507 | Get ORF Coding potential... Type: noncoding Potential: -0.902 Folding energies... MFEI: -29.247 AMFE: -0.630 GC content %: 46.424 | |
| Tdicoccoides_TRIDC6BG020760.4 TRIDC6BG020760.4 |
Low | No | 605 | OG0001507 | Get ORF Coding potential... Type: noncoding Potential: -1.289 Folding energies... MFEI: -31.091 AMFE: -0.638 GC content %: 48.760 | |
| Tdicoccoides_TRIDC6BG020760.5 TRIDC6BG020760.5 |
Low | No | 928 | OG0001507 | Get ORF Coding potential... Type: noncoding Potential: -0.970 Folding energies... MFEI: -29.084 AMFE: -0.628 GC content %: 46.336 | |
| Tdicoccoides_TRIDC6BG020760.6 TRIDC6BG020760.6 |
Low | No | 841 | OG0001507 | Get ORF Coding potential... Type: noncoding Potential: -0.958 Folding energies... MFEI: -29.929 AMFE: -0.629 GC content %: 47.562 | |
| Tdicoccoides_TRIDC6BG020760.7 TRIDC6BG020760.7 |
Low | No | 632 | OG0001507 | Get ORF Coding potential... Type: noncoding Potential: -1.294 Folding energies... MFEI: -31.566 AMFE: -0.629 GC content %: 50.158 | |
| Tdicoccoides_TRIDC6BG020760.8 TRIDC6BG020760.8 |
Low | No | 825 | OG0001507 | Get ORF Coding potential... Type: noncoding Potential: -1.248 Folding energies... MFEI: -29.539 AMFE: -0.623 GC content %: 47.394 | |
| Tdicoccoides_TRIDC6BG020760.9 TRIDC6BG020760.9 |
Low | No | 785 | OG0001507 | Get ORF Coding potential... Type: noncoding Potential: -1.074 Folding energies... MFEI: -29.503 AMFE: -0.633 GC content %: 46.624 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC6BG020760.4 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Mariner | |
| Tdicoccoides_TRIDC6BG020760.11 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Mariner | |
| Tdicoccoides_TRIDC6BG020760.5 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Mariner | |
| Tdicoccoides_TRIDC6BG020760.12 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Mariner | |
| Tdicoccoides_TRIDC6BG020760.6 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Mariner | |
| Tdicoccoides_TRIDC6BG020760.13 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Mariner | |
| Tdicoccoides_TRIDC6BG020760.7 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Mariner | |
| Tdicoccoides_TRIDC6BG020760.2 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Mariner | |
| Tdicoccoides_TRIDC6BG020760.8 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Mariner | |
| Tdicoccoides_TRIDC6BG020760.3 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Mariner |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
