GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Tdicoccoides_TRIDC6BG023660 [ TRIDC6BG023660]	6B	169654706	169675450	v1	Triticum dicoccoides (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Tdicoccoides_TRIDC6BG023660.2 TRIDC6BG023660.2	High	No	2222	OG0023297		Get ORF Coding potential... Type: noncoding Potential: -1.075 Folding energies... MFEI: -26.493 AMFE: -0.683 GC content %: 38.794
Tdicoccoides_TRIDC6BG023660.3 TRIDC6BG023660.3	High	No	1689	OG0023297		Get ORF Coding potential... Type: noncoding Potential: -1.147 Folding energies... MFEI: -28.964 AMFE: -0.655 GC content %: 44.227
Tdicoccoides_TRIDC6BG023660.4 TRIDC6BG023660.4	High	No	2256	OG0023297		Get ORF Coding potential... Type: noncoding Potential: -1.076 Folding energies... MFEI: -27.301 AMFE: -0.678 GC content %: 40.293

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).