Tdicoccoides TRIDC6BG024540
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC6BG024540 [ TRIDC6BG024540] |
6B | 177420211 | 177422785 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC6BG024540.1 TRIDC6BG024540.1 |
Low | No | 1101 | OG0004554 | Get ORF Coding potential... Type: noncoding Potential: -0.848 Folding energies... MFEI: -27.975 AMFE: -0.629 GC content %: 44.505 | |
| Tdicoccoides_TRIDC6BG024540.2 TRIDC6BG024540.2 |
Low | No | 2350 | OG0004554 | Get ORF Coding potential... Type: noncoding Potential: -1.131 Folding energies... MFEI: -28.068 AMFE: -0.634 GC content %: 44.298 | |
| Tdicoccoides_TRIDC6BG024540.3 TRIDC6BG024540.3 |
Low | No | 2538 | OG0004554 | Get ORF Coding potential... Type: noncoding Potential: -1.135 Folding energies... MFEI: -28.282 AMFE: -0.638 GC content %: 44.326 | |
| Tdicoccoides_TRIDC6BG024540.4 TRIDC6BG024540.4 |
Low | No | 1128 | OG0004554 | Get ORF Coding potential... Type: noncoding Potential: -0.891 Folding energies... MFEI: -27.119 AMFE: -0.647 GC content %: 41.933 | |
| Tdicoccoides_TRIDC6BG024540.5 TRIDC6BG024540.5 |
Low | No | 1190 | OG0004554 | Get ORF Coding potential... Type: noncoding Potential: -0.860 Folding energies... MFEI: -28.134 AMFE: -0.603 GC content %: 46.639 | |
| Tdicoccoides_TRIDC6BG024540.6 TRIDC6BG024540.6 |
Low | No | 1081 | OG0004554 | Get ORF Coding potential... Type: noncoding Potential: -1.009 Folding energies... MFEI: -26.216 AMFE: -0.688 GC content %: 38.113 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC6BG024540.3 | SwissProt | 2021-04-01 | Q8RX71 | 2.4e-6 |
| Tdicoccoides_TRIDC6BG024540.4 | SwissProt | 2021-04-01 | Q8RX71 | 2.93e-7 |
| Tdicoccoides_TRIDC6BG024540.5 | SwissProt | 2021-04-01 | Q8RX71 | 7.98e-8 |
| Tdicoccoides_TRIDC6BG024540.6 | SwissProt | 2021-04-01 | Q8RX71 | 7.04e-7 |
| Tdicoccoides_TRIDC6BG024540.1 | SwissProt | 2021-04-01 | Q8RX71 | 1.52e-6 |
| Tdicoccoides_TRIDC6BG024540.2 | SwissProt | 2021-04-01 | Q8RX71 | 2.18e-6 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
